##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546309_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2208838 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.214372443791714 31.0 31.0 33.0 30.0 34.0 2 31.556278912260655 31.0 31.0 34.0 30.0 34.0 3 31.651707368308585 31.0 31.0 34.0 30.0 34.0 4 35.514344646370624 37.0 35.0 37.0 33.0 37.0 5 35.442167782336234 37.0 35.0 37.0 33.0 37.0 6 35.47761311603658 37.0 35.0 37.0 33.0 37.0 7 35.81575968903107 37.0 35.0 37.0 35.0 37.0 8 35.6991685220917 37.0 35.0 37.0 35.0 37.0 9 37.402929956837035 39.0 37.0 39.0 35.0 39.0 10 36.98169354203432 39.0 37.0 39.0 33.0 39.0 11 36.76744605081948 39.0 35.0 39.0 32.0 39.0 12 36.341829052198484 38.0 35.0 39.0 32.0 39.0 13 36.17085408708108 38.0 35.0 39.0 32.0 39.0 14 37.16847229176608 39.0 35.0 41.0 32.0 41.0 15 37.33816106024978 39.0 35.0 41.0 32.0 41.0 16 37.37038297964812 39.0 35.0 41.0 32.0 41.0 17 37.28750908848906 39.0 35.0 41.0 32.0 41.0 18 37.211452356397345 39.0 35.0 41.0 32.0 41.0 19 37.11009091658148 39.0 35.0 41.0 32.0 41.0 20 36.98873389537847 39.0 35.0 41.0 32.0 41.0 21 36.84601632170399 38.0 35.0 41.0 31.0 41.0 22 36.74943250704669 38.0 35.0 40.0 31.0 41.0 23 36.64282305900206 38.0 35.0 40.0 31.0 41.0 24 36.634478852681816 38.0 35.0 40.0 31.0 41.0 25 36.56333511104028 38.0 35.0 40.0 31.0 41.0 26 36.47291879259593 38.0 35.0 40.0 31.0 41.0 27 36.3682678403758 38.0 35.0 40.0 30.0 41.0 28 36.29093260800475 38.0 35.0 40.0 30.0 41.0 29 36.2056216888699 38.0 35.0 40.0 30.0 41.0 30 36.06673961603341 38.0 35.0 40.0 30.0 41.0 31 35.898563407547314 38.0 35.0 40.0 30.0 41.0 32 35.73508333340879 38.0 34.0 40.0 29.0 41.0 33 35.55708612401634 38.0 34.0 40.0 28.0 41.0 34 35.33853048525967 38.0 34.0 40.0 27.0 41.0 35 35.150162211986576 38.0 34.0 40.0 26.0 41.0 36 34.96926709880942 38.0 34.0 40.0 25.0 41.0 37 34.81552517658606 38.0 34.0 40.0 24.0 41.0 38 34.69512657786583 37.0 33.0 40.0 24.0 41.0 39 34.62627589710065 37.0 33.0 40.0 24.0 41.0 40 34.44676839134423 37.0 33.0 40.0 23.0 41.0 41 34.332804397606346 37.0 33.0 40.0 23.0 41.0 42 34.20923671179145 37.0 33.0 40.0 23.0 41.0 43 34.183515495477714 37.0 33.0 40.0 23.0 41.0 44 34.00009371443266 36.0 33.0 40.0 23.0 41.0 45 33.95572740056084 36.0 33.0 40.0 23.0 41.0 46 33.85678352147147 36.0 33.0 40.0 23.0 41.0 47 33.774943205431995 36.0 33.0 40.0 23.0 41.0 48 33.6913100915504 35.0 33.0 40.0 23.0 41.0 49 33.67617181522593 36.0 33.0 40.0 23.0 41.0 50 33.548259763730975 35.0 32.0 40.0 22.0 41.0 51 33.34274446564211 35.0 32.0 39.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 3.0 10 3.0 11 9.0 12 17.0 13 20.0 14 33.0 15 100.0 16 255.0 17 620.0 18 1309.0 19 2423.0 20 4283.0 21 6704.0 22 9933.0 23 14053.0 24 19970.0 25 28111.0 26 36007.0 27 41716.0 28 45213.0 29 51329.0 30 60094.0 31 73008.0 32 90800.0 33 116061.0 34 183518.0 35 238165.0 36 182795.0 37 234838.0 38 329642.0 39 437741.0 40 65.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 35.511748711313366 22.869626473285955 27.41174318804729 14.206881627353388 2 33.382891819137484 24.314277461724217 29.07927154458589 13.223559174552413 3 29.6890944469445 24.79448470191114 31.492259731134652 14.024161120009706 4 27.47322347768374 26.86285730325175 30.028730038146755 15.635189180917749 5 23.25113928681053 31.49040355155063 29.61548108100277 15.642976080636062 6 21.450916726351142 39.97495515741761 27.820012151185374 10.754115965045875 7 85.04702472521751 4.767302989173492 7.791834439646547 2.393837845962447 8 85.35003472414002 4.353058033228331 7.738457958437875 2.5584492841937707 9 79.67442610096349 6.044173452285772 10.078104415081594 4.20329603166914 10 43.017142950275215 24.89793275921548 17.487973314475756 14.59695097603355 11 35.406444474425015 24.801818874901645 23.511864609355687 16.279872041317653 12 31.199888810315652 23.060360243711852 28.685942563465495 17.053808382507 13 24.181673803148986 29.955705216951173 28.391443827025793 17.471177152874045 14 19.91762184460789 32.98897429327094 29.642327775961842 17.45107608615933 15 18.424483823621287 24.18027035029278 39.61870449530477 17.77654133078116 16 21.130657839099108 21.67257173228639 37.121780773420234 20.07498965519427 17 20.948118422446555 21.77923414935817 29.769860895185612 27.502786533009665 18 23.958932253066997 22.911730058972182 31.82116569888783 21.30817198907299 19 28.482215535951482 23.779561923509103 26.71083166805352 21.027390872485896 20 29.518235379869417 23.35472316213321 25.71193541581592 21.415106042181456 21 25.942056411561193 25.839694898403593 27.92930038327845 20.288948306756765 22 24.738210769644493 24.370958848045895 26.63024631050353 24.260584071806083 23 22.95419582604066 27.25958173483071 26.390980234856514 23.395242204272108 24 22.399741402493074 24.557165351193706 32.48803216895037 20.55506107736285 25 22.08591123477593 25.19541949205872 30.798365475421917 21.92030379774343 26 20.49923987182401 28.970662402584523 28.070098395627024 22.459999329964443 27 21.499811212954505 26.976129530549546 29.059034659852827 22.465024596643122 28 20.556464530219056 26.513171178692147 32.557706812360166 20.372657478728634 29 21.095526245021137 24.81485740466254 32.37770266538334 21.71191368493298 30 22.51663544361334 25.783420966136944 30.364019452762044 21.335924137487673 31 26.31383560043788 25.37551418438111 26.45861760799117 21.852032607189845 32 26.91935759888231 26.071988982442353 26.81237827310106 20.19627514557428 33 26.191418293238343 25.76245971863939 26.161040329802365 21.885081658319894 34 22.008902418375634 26.750671620100704 28.960747687245508 22.27967827427815 35 22.58735135849709 25.621073161544665 29.109649508021867 22.681925971936376 36 26.39002950872812 26.45110234430954 26.095213863578948 21.06365428338339 37 23.124104166987347 28.370346761509897 27.465164941928744 21.04038412957401 38 23.200931892696524 29.216221379748085 25.603054637777873 21.979792089777522 39 22.47416967654486 27.90512477601345 26.5819856413191 23.038719906122584 40 23.768651209368908 25.667704014508985 26.752663617703064 23.810981158419043 41 20.782103531359024 25.270979582930032 27.458555131702735 26.488361754008217 42 23.153350313603806 26.904372344191835 25.484394962419156 24.457882379785207 43 23.201067710714867 26.729982008639837 25.879806486487468 24.189143794157832 44 22.889953903364574 27.546655752934345 27.539140489252723 22.024249854448357 45 20.98913546398604 29.32342706889324 26.60516524978292 23.082272217337803 46 23.115773995195667 28.07095857640986 27.27660425979633 21.53666316859815 47 22.957319640462543 26.838500605295636 27.723083358761485 22.48109639548034 48 22.861341574167053 25.62184279698194 28.542201827386165 22.974613801464844 49 22.146938797684573 25.112298864833004 29.242615347979346 23.498146989503077 50 21.522175913308264 28.210624771938914 27.579070986645466 22.688128328107357 51 21.971869372040864 29.21694574251258 25.875596127918843 22.935588757527714 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 725.0 1 1620.5 2 2516.0 3 11213.0 4 19910.0 5 14662.5 6 9415.0 7 9414.5 8 9414.0 9 9601.5 10 9789.0 11 9604.0 12 9419.0 13 9288.0 14 9157.0 15 8679.5 16 8202.0 17 8303.0 18 8404.0 19 8624.5 20 8845.0 21 8927.0 22 9009.0 23 10181.0 24 11353.0 25 13174.0 26 17332.0 27 19669.0 28 23158.0 29 26647.0 30 30612.5 31 34578.0 32 41841.5 33 49105.0 34 55730.5 35 62356.0 36 65978.5 37 69601.0 38 75791.5 39 81982.0 40 101931.0 41 121880.0 42 131545.0 43 141210.0 44 147967.5 45 154725.0 46 154444.0 47 154163.0 48 157229.5 49 160296.0 50 161042.0 51 161788.0 52 156813.5 53 151839.0 54 141959.0 55 132079.0 56 126265.5 57 120452.0 58 109821.5 59 99191.0 60 93001.5 61 86812.0 62 79137.0 63 71462.0 64 64388.0 65 57314.0 66 49140.5 67 40967.0 68 34605.5 69 28244.0 70 23479.0 71 18714.0 72 16078.0 73 13442.0 74 11064.0 75 6741.0 76 4796.0 77 3896.0 78 2996.0 79 2235.5 80 1475.0 81 1070.5 82 666.0 83 452.0 84 238.0 85 207.0 86 176.0 87 121.5 88 67.0 89 47.0 90 27.0 91 24.0 92 21.0 93 18.5 94 16.0 95 10.5 96 5.0 97 2.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2208838.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 19.926086650639625 #Duplication Level Percentage of deduplicated Percentage of total 1 79.4873410040794 15.83871644476226 2 5.884896857141622 2.3452592941096153 3 1.9719761692672353 1.1788130406544597 4 1.1275287506271432 0.8986894234433557 5 0.7745614694210606 0.7716989477965402 6 0.6331182183390949 0.7569341087234028 7 0.49427433172517304 0.6894267214199954 8 0.43248713430729296 0.689422089079515 9 0.36164846808016493 0.6485614840832801 >10 5.889062359045302 30.418485923176462 >50 2.614905793229159 36.32960008467155 >100 0.32431136864722254 8.271961310753998 >500 0.002515813940701247 0.3299031219159582 >1k 0.0011435517912278396 0.36508549656979433 >5k 0.0 0.0 >10k+ 2.287103582455679E-4 0.46744250883989275 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 10257 0.46436180471360955 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 3001 0.135863291015457 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.020191612060277846 0.0 2 0.0 0.0 0.0 0.07189300437605656 0.0 3 0.0 0.0 0.0 0.11042004891259567 0.0 4 0.0 0.0 0.0 0.16805216136267123 0.0 5 0.0 0.0 0.0 0.29255201151012433 0.0 6 0.0 0.0 0.0 0.4732805212514453 0.0 7 0.0 0.0 0.0 0.5920307419557251 0.0 8 0.0 0.0 0.0 0.9468779512123568 0.0 9 0.0 0.0 0.0 1.1374759036199125 0.0 10 0.0 0.0 0.0 1.4307975505673118 0.0 11 0.0 0.0 0.0 1.6205805948648113 0.0 12 0.0 0.0 0.0 1.7945182036889984 0.0 13 0.0 0.0 0.0 1.8650530278816282 0.0 14 0.0 0.0 0.0 1.8948877192442362 0.0 15 0.0 0.0 0.0 1.9346371259458592 0.0 16 0.0 0.0 0.0 2.0185273886088524 0.0 17 0.0 0.0 0.0 2.1164521798339218 0.0 18 0.0 0.0 0.0 2.256480556745221 0.0 19 0.0 0.0 0.0 2.321446842185801 0.0 20 0.0 0.0 0.0 2.401443654989637 0.0 21 0.0 0.0 0.0 2.4947053609182746 0.0 22 0.0 0.0 0.0 2.5874690674463223 0.0 23 0.0 0.0 0.0 2.6938598484814187 0.0 24 0.0 0.0 0.0 2.7739019339580357 0.0 25 4.5272672780892035E-5 0.0 0.0 2.8433502140039244 0.0 26 4.5272672780892035E-5 0.0 0.0 2.912617403358689 0.0 27 4.5272672780892035E-5 0.0 0.0 2.984782043771431 0.0 28 4.5272672780892035E-5 0.0 0.0 3.056946684184173 0.0 29 4.5272672780892035E-5 0.0 0.0 3.1450473054157886 0.0 30 4.5272672780892035E-5 0.0 0.0 3.2591797134964176 0.0 31 4.5272672780892035E-5 0.0 0.0 3.3518981473516845 0.0 32 4.5272672780892035E-5 0.0 0.0 3.449687120558411 0.0 33 4.5272672780892035E-5 0.0 0.0 3.545076642107751 0.0 34 4.5272672780892035E-5 0.0 0.0 3.6487510627759936 0.0 35 4.5272672780892035E-5 0.0 0.0 3.760484019199235 0.0 36 4.5272672780892035E-5 0.0 0.0 3.8563715401491643 0.0 37 4.5272672780892035E-5 0.0 0.0 3.9612683229824914 0.0 38 4.5272672780892035E-5 0.0 0.0 4.069651101619947 0.0 39 4.5272672780892035E-5 0.0 0.0 4.209181479130656 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAATACG 20 7.0346997E-4 45.000004 1 ACGTCGA 20 7.0346997E-4 45.000004 14 ATACGTC 20 7.0346997E-4 45.000004 14 CGTTTTT 8455 0.0 41.859848 1 CGTAAGG 295 0.0 41.18644 2 GCGTAAG 160 0.0 39.375004 1 ATGTCGC 35 6.2509043E-6 38.57143 11 CTAAGCG 65 9.094947E-12 38.076927 1 CGGTCTA 305 0.0 37.62295 31 TTCGAAT 55 2.752131E-9 36.818184 16 ATAGGGC 1155 0.0 36.62338 4 AGGGCGA 2620 0.0 36.498093 6 GTACGAG 285 0.0 36.31579 1 ACGGGTA 355 0.0 36.126762 5 TAACGCG 25 0.0021075278 36.000004 1 CACTACG 25 0.0021075278 36.000004 17 CGTCGAA 25 0.0021075278 36.000004 15 GCCGATT 225 0.0 36.0 9 GGGCGAT 4890 0.0 35.93558 7 GTAGGGT 1085 0.0 35.6682 4 >>END_MODULE