##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546308_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2081687 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.07482537000039 31.0 31.0 33.0 30.0 34.0 2 31.406290667136798 31.0 31.0 34.0 30.0 34.0 3 31.49630612094902 31.0 31.0 34.0 30.0 34.0 4 35.37874714114081 37.0 35.0 37.0 33.0 37.0 5 35.29537245512894 37.0 35.0 37.0 33.0 37.0 6 35.32606294798401 37.0 35.0 37.0 32.0 37.0 7 35.70885248358663 37.0 35.0 37.0 35.0 37.0 8 35.595421886191346 37.0 35.0 37.0 35.0 37.0 9 37.32910519208699 39.0 37.0 39.0 35.0 39.0 10 36.8236300654229 39.0 37.0 39.0 32.0 39.0 11 36.58553999712733 39.0 35.0 39.0 32.0 39.0 12 36.14751160957435 38.0 35.0 39.0 32.0 39.0 13 35.955708519100135 38.0 35.0 39.0 31.0 39.0 14 36.91636975203285 39.0 35.0 41.0 31.0 41.0 15 37.09362886927766 39.0 35.0 41.0 32.0 41.0 16 37.12202987288675 39.0 35.0 41.0 32.0 41.0 17 37.05048933869501 39.0 35.0 41.0 32.0 41.0 18 36.97700470820061 39.0 35.0 40.0 31.0 41.0 19 36.86492205600554 38.0 35.0 40.0 31.0 41.0 20 36.71255428890126 38.0 35.0 40.0 31.0 41.0 21 36.57121171434515 38.0 35.0 40.0 31.0 41.0 22 36.467859481276484 38.0 35.0 40.0 30.0 41.0 23 36.35879553458325 38.0 35.0 40.0 30.0 41.0 24 36.34627492029301 38.0 35.0 40.0 30.0 41.0 25 36.27371261865977 38.0 35.0 40.0 30.0 41.0 26 36.16602255766597 38.0 35.0 40.0 30.0 41.0 27 36.038910748830155 38.0 35.0 40.0 30.0 41.0 28 35.95260670792487 38.0 35.0 40.0 30.0 41.0 29 35.82243728283839 38.0 34.0 40.0 29.0 41.0 30 35.65656508399197 38.0 34.0 40.0 29.0 41.0 31 35.47624883087611 38.0 34.0 40.0 28.0 41.0 32 35.30298695240927 38.0 34.0 40.0 27.0 41.0 33 35.090021698747215 38.0 34.0 40.0 26.0 41.0 34 34.84263100072201 37.0 34.0 40.0 25.0 41.0 35 34.63895484767883 37.0 33.0 40.0 24.0 41.0 36 34.438129747651786 37.0 33.0 40.0 23.0 41.0 37 34.24604707624153 37.0 33.0 40.0 23.0 41.0 38 34.122326747488934 37.0 33.0 40.0 23.0 41.0 39 34.03221810003137 37.0 33.0 40.0 23.0 41.0 40 33.80752533882375 36.0 33.0 40.0 21.0 41.0 41 33.653698178448536 36.0 32.0 40.0 21.0 41.0 42 33.527637920590365 36.0 32.0 40.0 21.0 41.0 43 33.51017516081909 36.0 32.0 40.0 21.0 41.0 44 33.312495586512284 35.0 32.0 40.0 20.0 41.0 45 33.265362660188586 35.0 32.0 40.0 20.0 41.0 46 33.173705268851656 35.0 32.0 39.0 20.0 41.0 47 33.0834957416749 35.0 32.0 39.0 20.0 41.0 48 32.982136603629655 35.0 31.0 39.0 20.0 41.0 49 32.95429284037418 35.0 31.0 39.0 20.0 41.0 50 32.80949585600525 35.0 31.0 39.0 20.0 41.0 51 32.58304106236913 35.0 31.0 39.0 18.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 2.0 9 5.0 10 3.0 11 4.0 12 12.0 13 15.0 14 35.0 15 105.0 16 304.0 17 699.0 18 1588.0 19 2977.0 20 5262.0 21 8247.0 22 11952.0 23 16934.0 24 23568.0 25 31895.0 26 40780.0 27 47045.0 28 50463.0 29 55073.0 30 63834.0 31 75517.0 32 91082.0 33 114602.0 34 174399.0 35 215115.0 36 172284.0 37 218236.0 38 297036.0 39 362560.0 40 53.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.81406522690491 23.094250000120095 28.138091845700146 14.953592927274851 2 32.21166294452528 25.1505149429285 29.40432447337184 13.233497639174383 3 29.67280864029991 25.02532801521074 31.943274853520247 13.358588490969103 4 26.254907678243654 27.43049267252954 30.796752825953185 15.517846823273624 5 23.250133185248313 31.536393319456767 30.214965074000077 14.998508421294844 6 20.71430527259862 40.293617628394664 27.804660354798777 11.187416744207942 7 85.69717733741912 4.326346852336591 7.907048465979756 2.0694273442645317 8 86.40698625681958 3.694263354673397 7.474178394734656 2.4245719937723584 9 81.37452940811947 5.165666115991501 9.81694174004065 3.642862735848377 10 43.241178909221226 24.580688643393557 16.707362826399937 15.470769620985287 11 35.846743530607625 23.74780646658215 23.317050065643873 17.088399937166347 12 32.36812258519172 21.299743909627146 28.15279146192487 18.179342043256263 13 24.567670355821985 27.625959137949174 28.3289947047755 19.477375801453338 14 20.601848404683317 30.848874014200984 29.43996864081872 19.10930894029698 15 19.24093295485825 23.116443538341738 37.8654427875084 19.77718071929161 16 21.317565993350584 19.814410139468613 36.70282804283257 22.16519582434823 17 21.404370589814896 21.144581293921707 30.00768127004684 27.443366846216556 18 24.325510991806166 22.913963530540375 30.79977921752886 21.9607462601246 19 27.924178803057327 24.74449809217236 25.88631239951059 21.445010705259723 20 29.935624327768778 23.069510449937958 25.29323572660059 21.701629495692675 21 26.103828289267312 25.39051259867598 27.155379266911883 21.350279845144826 22 24.762416251818838 23.119229740109827 26.48087824922767 25.63747575884367 23 23.710048628828446 26.60087707710141 25.624553547195134 24.064520746875008 24 23.02132837453469 24.608838888843522 31.355194128608193 21.0146386080136 25 23.227315153526924 24.30903397100525 29.332892024593516 23.130758850874315 26 22.065420978273874 27.353055478561377 26.750179061501562 23.831344481663187 27 22.41830784359032 26.28219324038628 28.241373462965374 23.05812545305802 28 21.39159249205092 26.16498061428063 31.10116938809725 21.3422575055712 29 22.135316212283595 24.983823216458575 30.247919115601913 22.632941455655917 30 23.795364048485677 25.265517822804295 29.147801758861924 21.79131636984811 31 27.28215144735976 24.826594968407832 25.48072789040812 22.410525693824287 32 27.77737479265615 24.29673625285646 25.567148183180276 22.35874077130712 33 26.807632463477937 25.072165027691483 24.944384050051713 23.175818458778867 34 23.512228303294393 25.491824659518937 27.402390465041094 23.593556572145573 35 23.471972491541713 24.797291811881422 27.72366835167823 24.007067344898633 36 27.281623029783052 26.220944839449928 24.611480976727048 21.88595115403997 37 24.150844963724133 27.95737303446676 26.222914395872195 21.668867605936914 38 24.577374024048765 28.189924806178833 24.295295114010894 22.937406055761507 39 23.861608397419978 27.247420001181734 24.913735830602775 23.977235770795513 40 25.221418974130117 25.22473359347491 26.266388751046627 23.28745868134835 41 22.258773773386682 24.090509284056633 26.867775991299364 26.782940951257324 42 23.54369316808915 26.1125231603022 24.975080307462168 25.368703364146484 43 23.63020953678435 25.65198322322232 26.09859215146177 24.61921508853156 44 23.854690930961283 26.291656718805466 26.787648671486153 23.066003678747094 45 22.037222694862386 28.050662755736095 25.70251915874 24.209595390661516 46 23.499210015722824 27.66780020243197 26.3710634691959 22.461926312649307 47 23.35149328405279 26.498219953335923 27.073282390676408 23.07700437193488 48 23.644476811355407 24.84528173543861 27.76733485869874 23.742906594507243 49 22.996732938237113 24.83706724401891 28.044754086469293 24.121445731274683 50 22.28750047437487 26.764302222188064 27.06060036883547 23.8875969346016 51 22.455008846190612 27.854331607009126 25.745320982453173 23.94533856434709 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 747.0 1 1626.5 2 2506.0 3 12530.0 4 22554.0 5 16342.5 6 10131.0 7 10008.0 8 9885.0 9 10021.5 10 10158.0 11 10005.5 12 9853.0 13 9682.0 14 9511.0 15 9129.5 16 8748.0 17 8408.5 18 8069.0 19 7874.5 20 7680.0 21 7695.0 22 7710.0 23 8507.0 24 9304.0 25 9948.0 26 13085.5 27 15579.0 28 18029.0 29 20479.0 30 23055.0 31 25631.0 32 29762.0 33 33893.0 34 38864.5 35 43836.0 36 48269.5 37 52703.0 38 58163.0 39 63623.0 40 76804.0 41 89985.0 42 104370.5 43 118756.0 44 124086.5 45 129417.0 46 131602.0 47 133787.0 48 140624.0 49 147461.0 50 152464.5 51 157468.0 52 151779.5 53 146091.0 54 137428.0 55 128765.0 56 128193.0 57 127621.0 58 123145.0 59 118669.0 60 113051.5 61 107434.0 62 95874.5 63 84315.0 64 75234.5 65 66154.0 66 57064.5 67 47975.0 68 40694.0 69 33413.0 70 28316.0 71 23219.0 72 19763.0 73 16307.0 74 13500.0 75 8205.0 76 5717.0 77 4194.0 78 2671.0 79 2000.5 80 1330.0 81 921.5 82 513.0 83 425.0 84 337.0 85 256.0 86 175.0 87 148.0 88 121.0 89 100.5 90 80.0 91 46.5 92 13.0 93 9.5 94 6.0 95 3.5 96 1.0 97 0.5 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2081687.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 22.598462666243066 #Duplication Level Percentage of deduplicated Percentage of total 1 77.85158395607567 17.593261135392634 2 5.86121890054791 2.6490907300542035 3 2.1946881357264973 1.4878973369778554 4 1.3632718021473191 1.232313876990724 5 0.9856451016354159 1.1137032015736645 6 0.7622806220440385 1.0335822107077646 7 0.6561270412025967 1.0379223711450587 8 0.548929559003676 0.9923971316433475 9 0.4659152306187461 0.9476071150294587 >10 7.529070084548244 41.36381979146439 >50 1.6436521795126546 24.66154785445583 >100 0.13246479509482822 4.243637026460754 >500 0.003649752555116102 0.5422738308704792 >1k 0.0012881479606292126 0.5036058302259618 >5k 0.0 0.0 >10k+ 2.146913267715354E-4 0.5973405570079038 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 12312 0.5914433822183642 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 2867 0.13772483567414312 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 2399 0.1152430696833866 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 4.8037961518710546E-5 0.0 0.0 0.020704361414564245 0.0 2 4.8037961518710546E-5 0.0 0.0 0.07138441081680387 0.0 3 4.8037961518710546E-5 0.0 0.0 0.1138980067608627 0.0 4 4.8037961518710546E-5 0.0 0.0 0.1841295065012175 0.0 5 4.8037961518710546E-5 0.0 0.0 0.33285503536314537 0.0 6 4.8037961518710546E-5 0.0 0.0 0.637463749353289 0.0 7 4.8037961518710546E-5 0.0 0.0 0.8485425522665031 0.0 8 4.8037961518710546E-5 0.0 0.0 1.454637512748074 0.0 9 4.8037961518710546E-5 0.0 0.0 1.8118958325627244 0.0 10 4.8037961518710546E-5 0.0 0.0 2.276951338025361 0.0 11 4.8037961518710546E-5 0.0 0.0 2.532225065535789 0.0 12 4.8037961518710546E-5 0.0 0.0 2.7494046895618793 0.0 13 4.8037961518710546E-5 0.0 0.0 2.840196436832242 0.0 14 4.8037961518710546E-5 0.0 0.0 2.8829982605454134 0.0 15 4.8037961518710546E-5 0.0 0.0 2.925031476874285 0.0 16 4.8037961518710546E-5 0.0 0.0 3.008857719724435 0.0 17 4.8037961518710546E-5 0.0 0.0 3.1067110473380484 0.0 18 4.8037961518710546E-5 0.0 0.0 3.2468858190496457 0.0 19 4.8037961518710546E-5 0.0 0.0 3.3144752309064716 4.8037961518710546E-5 20 4.8037961518710546E-5 0.0 0.0 3.389558564760216 4.8037961518710546E-5 21 4.8037961518710546E-5 0.0 0.0 3.4810708814533595 4.8037961518710546E-5 22 4.8037961518710546E-5 0.0 0.0 3.576089969337369 4.8037961518710546E-5 23 4.8037961518710546E-5 0.0 0.0 3.6829263957549814 4.8037961518710546E-5 24 4.8037961518710546E-5 0.0 0.0 3.766320296951463 4.8037961518710546E-5 25 4.8037961518710546E-5 0.0 0.0 3.836503758730299 4.8037961518710546E-5 26 4.8037961518710546E-5 0.0 0.0 3.9042853224331995 4.8037961518710546E-5 27 4.8037961518710546E-5 0.0 0.0 3.975717771211522 4.8037961518710546E-5 28 4.8037961518710546E-5 0.0 0.0 4.052722623526015 4.8037961518710546E-5 29 4.8037961518710546E-5 0.0 0.0 4.1409203208743675 4.8037961518710546E-5 30 4.8037961518710546E-5 0.0 0.0 4.266587628207315 4.8037961518710546E-5 31 4.8037961518710546E-5 0.0 0.0 4.362999816975367 4.8037961518710546E-5 32 4.8037961518710546E-5 0.0 0.0 4.462822701011247 4.8037961518710546E-5 33 4.8037961518710546E-5 0.0 0.0 4.5624053952395345 4.8037961518710546E-5 34 4.8037961518710546E-5 0.0 0.0 4.665590936581724 4.8037961518710546E-5 35 4.8037961518710546E-5 0.0 0.0 4.785109384840276 4.8037961518710546E-5 36 4.8037961518710546E-5 0.0 0.0 4.888391002105504 4.8037961518710546E-5 37 4.8037961518710546E-5 0.0 0.0 4.993834327639074 4.8037961518710546E-5 38 4.8037961518710546E-5 0.0 0.0 5.120126128471764 4.8037961518710546E-5 39 4.8037961518710546E-5 0.0 0.0 5.313142657853943 4.8037961518710546E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 9005 0.0 42.726265 1 TATCGTG 105 0.0 38.57143 1 TGATTCG 415 0.0 38.493977 15 AAGGGCG 930 0.0 37.98387 5 AGGGCGA 2495 0.0 37.605213 6 ACCCGCT 1085 0.0 37.32719 34 TAAGGGA 1685 0.0 37.121662 4 GTTTTTT 11065 0.0 36.947582 2 GGGCGAT 4625 0.0 36.778378 7 TCACGAC 290 0.0 36.465515 25 AATACGG 130 0.0 36.346157 2 AATGGGC 715 0.0 36.188812 4 CGAATAT 280 0.0 36.160717 14 CATACGA 660 0.0 36.136364 18 CGACGGT 275 0.0 36.0 28 ACCGTAT 25 0.0021075003 36.0 28 CATATGC 945 0.0 35.95238 33 TAGGGAC 1700 0.0 35.735294 5 CGGTCTA 290 0.0 35.689655 31 TATGGGC 1080 0.0 35.625 4 >>END_MODULE