SRR1546307_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546307_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1392133
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6529	0.4689925459708232	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	5246	0.3768318113283716	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1546	0.11105260776089641	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCATAAC	25	3.891231E-5	45.000004	21
CGGCGTA	25	3.891231E-5	45.000004	34
GTACCGT	20	7.0338E-4	45.000004	15
GATCGCG	20	7.0338E-4	45.000004	10
CATCTCG	40	6.8175723E-9	45.000004	24
TTCGTAC	20	7.0338E-4	45.000004	33
ATTCGAA	25	3.891231E-5	45.000004	40
TATTCGC	25	3.891231E-5	45.000004	12
TCGTCAG	20	7.0338E-4	45.000004	40
TTGCGCA	65	0.0	45.000004	1
AGCGAAT	20	7.0338E-4	45.000004	29
CGTACAC	25	3.891231E-5	45.000004	8
CCACGCG	20	7.0338E-4	45.000004	1
GTAACGA	20	7.0338E-4	45.000004	17
GCGTACC	20	7.0338E-4	45.000004	13
TACGTTA	20	7.0338E-4	45.000004	42
CTTACGT	25	3.891231E-5	45.000004	24
CGGGTCA	35	1.2121745E-7	45.0	6
CTATGCG	45	3.8562575E-10	45.0	1
AAATGCG	35	1.2121745E-7	45.0	1