##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546307_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1392133 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.155860108193686 31.0 31.0 33.0 30.0 34.0 2 31.489437431624708 31.0 31.0 34.0 30.0 34.0 3 31.547678993314577 31.0 31.0 34.0 30.0 34.0 4 35.38544018423527 37.0 35.0 37.0 33.0 37.0 5 35.277749324238414 37.0 35.0 37.0 33.0 37.0 6 35.30637302614046 37.0 35.0 37.0 32.0 37.0 7 35.78280954477769 37.0 35.0 37.0 35.0 37.0 8 35.70668966255379 37.0 35.0 37.0 35.0 37.0 9 37.4694975264576 39.0 37.0 39.0 35.0 39.0 10 36.96136647863386 39.0 37.0 39.0 32.0 39.0 11 36.57748936344444 39.0 35.0 39.0 32.0 39.0 12 35.42670420139455 37.0 35.0 39.0 31.0 39.0 13 34.845113218349105 37.0 34.0 39.0 29.0 39.0 14 35.658501019658324 37.0 34.0 40.0 28.0 41.0 15 36.128703938488634 37.0 35.0 40.0 31.0 41.0 16 36.35112018751082 37.0 35.0 40.0 32.0 41.0 17 36.32905476703734 37.0 35.0 40.0 32.0 41.0 18 36.25845806399245 36.0 35.0 40.0 31.0 41.0 19 36.12282662647893 36.0 35.0 40.0 31.0 41.0 20 35.92629224362902 36.0 34.0 40.0 31.0 41.0 21 35.72701099679413 35.0 34.0 40.0 30.0 41.0 22 35.58658044885079 35.0 34.0 40.0 30.0 41.0 23 35.57480571181058 35.0 34.0 40.0 30.0 41.0 24 35.52312889644883 35.0 34.0 40.0 30.0 41.0 25 35.47766053961798 35.0 34.0 40.0 30.0 41.0 26 35.33494141723528 35.0 34.0 40.0 30.0 41.0 27 35.201160377636334 35.0 34.0 40.0 29.0 41.0 28 35.21268585688293 35.0 34.0 40.0 29.0 41.0 29 35.22831008244184 36.0 34.0 40.0 29.0 41.0 30 35.12270451170973 36.0 34.0 40.0 29.0 41.0 31 34.84086721599157 35.0 34.0 40.0 29.0 41.0 32 34.600451249988325 35.0 34.0 40.0 27.0 41.0 33 34.38901168207348 35.0 33.0 40.0 26.0 41.0 34 34.20523326435046 35.0 34.0 40.0 25.0 41.0 35 34.00599583516805 35.0 33.0 40.0 24.0 41.0 36 33.72673444275799 35.0 33.0 40.0 23.0 41.0 37 33.550665776904935 35.0 33.0 39.0 23.0 41.0 38 33.54456147508895 35.0 33.0 39.0 23.0 41.0 39 33.546457845622506 35.0 33.0 39.0 23.0 41.0 40 33.285067590524754 35.0 32.0 39.0 22.0 41.0 41 33.28629161150551 35.0 32.0 39.0 22.0 41.0 42 33.17891322165339 35.0 32.0 39.0 22.0 41.0 43 33.11074732083788 35.0 32.0 39.0 22.0 41.0 44 32.97890359613629 35.0 32.0 39.0 21.0 41.0 45 32.9397313331413 35.0 32.0 39.0 22.0 41.0 46 32.87119693305166 35.0 32.0 38.0 21.0 40.0 47 32.827016527874854 35.0 32.0 38.0 21.0 40.0 48 32.790981896126304 35.0 32.0 38.0 20.0 40.0 49 32.84981822857443 35.0 32.0 38.0 20.0 40.0 50 32.656593155970015 35.0 32.0 38.0 20.0 40.0 51 32.40768734021821 35.0 31.0 38.0 19.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 0.0 10 1.0 11 3.0 12 1.0 13 5.0 14 25.0 15 67.0 16 175.0 17 481.0 18 1059.0 19 2048.0 20 3526.0 21 5492.0 22 8110.0 23 11722.0 24 16302.0 25 22583.0 26 29236.0 27 33605.0 28 35283.0 29 38145.0 30 44898.0 31 54074.0 32 68199.0 33 88801.0 34 161775.0 35 233422.0 36 88258.0 37 102118.0 38 140318.0 39 202367.0 40 32.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.145371886163176 23.51298331409427 30.281014816831437 15.060629982911117 2 29.682580615501536 26.13069297258236 30.52481336194171 13.661913049974391 3 27.51202650896143 24.932028764493047 33.72774009379851 13.828204632747015 4 25.09113712554763 27.787718558499797 32.26193187001529 14.859212445937278 5 23.296624675946912 31.296219542242014 31.37264902132196 14.034506760489121 6 21.51080392462502 39.14776820892831 28.51056615998615 10.830861706460517 7 84.96601976966282 5.130472447675618 7.948162998793936 1.9553447838676334 8 87.18843673700717 3.226272202440428 7.275454284899503 2.3098367756529012 9 83.26912730321025 4.667801136816669 9.297172037441825 2.7658995225312526 10 57.266798502729266 20.07344125884524 12.923980682880156 9.735779555545339 11 52.097249328907516 16.89306984318309 20.37125763127517 10.63842319663423 12 46.60287486899599 20.38871286005001 21.776798624844034 11.231613646109963 13 20.380236658422724 45.44522685691669 21.722062475352573 12.45247400930802 14 12.717606722920872 47.434045453990386 26.859071654791606 12.989276168297136 15 11.233265787105111 22.01578441140322 53.83120721942516 12.919742582066512 16 12.592475000592614 15.480058299027464 52.48018687869621 19.447279821683704 17 14.355955932371403 16.59259567871748 29.331321073489384 39.720127315421735 18 20.524906743824044 21.621712867951555 36.61568255331925 21.23769783490514 19 29.20949363315143 22.8623989230914 25.48370019243851 22.44440725131866 20 32.019282640379906 21.014658800560003 25.59123302155757 21.374825537502524 21 21.384522886821877 28.70882307940405 27.96629345041027 21.940360583363802 22 23.06000935255468 24.56676194013072 24.324400039364054 28.04882866795055 23 18.446226043057667 31.641948003531272 23.853324359094998 26.05850159431606 24 19.1728089198374 22.553233060346965 41.94031748403349 16.33364053578214 25 15.033046411513842 24.908108636171974 38.97687936425614 21.08196558805804 26 15.206664880438867 34.447283413294564 29.19002710229554 21.15602460397103 27 16.18782113490593 35.552350242397814 28.700346877776767 19.559481744919488 28 13.23623533096335 28.01643233800219 41.2029597746767 17.54437255635776 29 13.376092657813585 22.356412785272674 40.910027993015035 23.357466563898708 30 17.70613870944802 30.1693875513331 32.39051153876821 19.733962200450677 31 28.47249508488054 26.941894201200604 24.690026024812283 19.89558468910657 32 30.042460023575334 26.12135478434891 26.041764687713027 17.79442050436273 33 28.38723024308741 27.230587882048624 25.151404355761986 19.230777519101984 34 18.261329916035322 26.489782226267174 29.437201761613295 25.81168609608421 35 19.30605768270704 24.546002429365586 32.13529167112625 24.012648216801125 36 31.08697229359551 23.007428169578624 26.090251434309796 19.81534810251607 37 20.112158823905474 30.609503545997402 30.12442058337817 19.153917046718956 38 19.560343731525652 32.33010064411949 25.03173188193944 23.077823742415415 39 19.475007057515338 31.764781094909754 27.838791264915063 20.92142058265985 40 23.416081653117914 25.48018041379667 25.16778210127912 25.9359558318063 41 16.3220755488161 23.272058057671213 27.447090184630348 32.95877620888234 42 21.80653716275672 25.02957691542403 23.98951824286904 29.174367678950215 43 22.14177812033764 26.639336902436767 25.616015136484805 25.602869840740794 44 19.575787658219436 30.43976401680012 27.77198730293729 22.212461022043154 45 15.803087779687717 38.13816639645781 22.23889527796554 23.819850545888936 46 22.086970138628995 33.21169744557452 25.430616183942195 19.270716231854284 47 21.578541705426133 26.914957119757954 27.870181943822896 23.636319230993017 48 22.83912528472495 22.47852755447935 31.63390279520707 23.048444365588633 49 20.543295791422228 22.225318988918445 32.94656473196167 24.284820487697655 50 18.59039330293873 32.96251148417572 26.87623955469772 21.57085565818783 51 17.096570514455156 34.97539387400486 22.776200262474923 25.151835349065067 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 816.0 1 1020.0 2 1224.0 3 5877.0 4 10530.0 5 8060.0 6 5590.0 7 6093.5 8 6597.0 9 7100.0 10 7603.0 11 7734.0 12 7865.0 13 7629.5 14 7394.0 15 6967.0 16 6540.0 17 6369.0 18 6198.0 19 5648.5 20 5099.0 21 4948.5 22 4798.0 23 4754.5 24 4711.0 25 5406.5 26 6291.5 27 6481.0 28 8462.5 29 10444.0 30 13336.0 31 16228.0 32 21394.0 33 26560.0 34 30114.0 35 33668.0 36 36371.5 37 39075.0 38 46318.0 39 53561.0 40 79445.5 41 105330.0 42 128860.5 43 152391.0 44 151724.0 45 151057.0 46 142539.5 47 134022.0 48 126230.5 49 118439.0 50 114521.5 51 110604.0 52 96575.0 53 82546.0 54 72462.5 55 62379.0 56 56175.0 57 49971.0 58 46196.5 59 42422.0 60 38558.5 61 34695.0 62 31846.0 63 28997.0 64 23679.0 65 18361.0 66 15176.0 67 11991.0 68 10357.0 69 8723.0 70 6981.0 71 5239.0 72 4483.5 73 3728.0 74 2779.5 75 1400.5 76 970.0 77 827.5 78 685.0 79 479.5 80 274.0 81 195.5 82 117.0 83 149.5 84 182.0 85 117.0 86 52.0 87 34.5 88 17.0 89 12.5 90 8.0 91 7.5 92 7.0 93 8.5 94 10.0 95 5.0 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1392133.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 19.78496397531696 #Duplication Level Percentage of deduplicated Percentage of total 1 81.68722313703437 16.161787670099027 2 7.511796524559664 2.9724124725664813 3 2.352691966405637 1.3964377740105944 4 1.0806648833335808 0.8552366314457999 5 0.674584537657632 0.6673315387931048 6 0.4480129183963456 0.5318351670568988 7 0.3177347776252352 0.4400459790314437 8 0.25378313288263576 0.40168721133008195 9 0.2149266002270595 0.382708353854675 >10 2.6384927639196736 12.628042484741542 >50 1.3500541314521697 19.70384841733645 >100 1.4660231204549568 42.49336094864507 >500 0.002552776577906641 0.32850930892651375 >1k 7.293647365447547E-4 0.18716300183513657 >5k 7.293647365447547E-4 0.8495930403271907 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6529 0.4689925459708232 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 5246 0.3768318113283716 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 1546 0.11105260776089641 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.07686047238302662 0.0 2 0.0 0.0 0.0 0.3180012254576251 0.0 3 0.0 0.0 0.0 0.44370760552332283 0.0 4 0.0 0.0 0.0 0.6475674378812943 0.0 5 0.0 0.0 0.0 1.0907722178843544 0.0 6 0.0 0.0 0.0 1.5006468491157094 0.0 7 0.0 0.0 0.0 1.7493299849942499 0.0 8 0.0 0.0 0.0 2.402069342512533 0.0 9 0.0 0.0 0.0 2.6488130085272026 0.0 10 0.0 0.0 0.0 3.0714737744166687 0.0 11 0.0 0.0 0.0 3.4753863316220506 0.0 12 0.0 0.0 0.0 3.813859738976089 0.0 13 0.0 0.0 0.0 3.95091560935629 0.0 14 0.0 0.0 0.0 3.99954602038742 0.0 15 0.0 0.0 0.0 4.089408124080099 0.0 16 0.0 0.0 0.0 4.3017441580653575 0.0 17 0.0 0.0 0.0 4.535055199467292 0.0 18 0.0 0.0 0.0 4.889978184555642 0.0 19 0.0 0.0 0.0 5.023945269597086 0.0 20 0.0 0.0 0.0 5.165598401876832 0.0 21 0.0 0.0 0.0 5.357462253965677 0.0 22 0.0 0.0 0.0 5.540849904427235 0.0 23 0.0 0.0 0.0 5.776890570082025 0.0 24 0.0 0.0 0.0 5.942032837379762 0.0 25 0.0 0.0 0.0 6.072192814910644 0.0 26 0.0 0.0 0.0 6.206231732169268 0.0 27 0.0 0.0 0.0 6.330214139022637 0.0 28 0.0 0.0 0.0 6.455274029133711 0.0 29 0.0 0.0 0.0 6.590749590735943 0.0 30 0.0 0.0 0.0 6.791305141103615 0.0 31 0.0 0.0 0.0 6.973040650570025 0.0 32 0.0 0.0 0.0 7.1216615079162695 0.0 33 0.0 0.0 0.0 7.260369519291619 0.0 34 0.0 0.0 0.0 7.419837041432104 0.0 35 0.0 0.0 0.0 7.645821196681639 0.0 36 0.0 0.0 0.0 7.816422712485086 0.0 37 0.0 0.0 0.0 7.979410013267411 0.0 38 0.0 0.0 0.0 8.128964689437 0.0 39 0.0 0.0 0.0 8.289006869314928 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCATAAC 25 3.891231E-5 45.000004 21 CGGCGTA 25 3.891231E-5 45.000004 34 GTACCGT 20 7.0338E-4 45.000004 15 GATCGCG 20 7.0338E-4 45.000004 10 CATCTCG 40 6.8175723E-9 45.000004 24 TTCGTAC 20 7.0338E-4 45.000004 33 ATTCGAA 25 3.891231E-5 45.000004 40 TATTCGC 25 3.891231E-5 45.000004 12 TCGTCAG 20 7.0338E-4 45.000004 40 TTGCGCA 65 0.0 45.000004 1 AGCGAAT 20 7.0338E-4 45.000004 29 CGTACAC 25 3.891231E-5 45.000004 8 CCACGCG 20 7.0338E-4 45.000004 1 GTAACGA 20 7.0338E-4 45.000004 17 GCGTACC 20 7.0338E-4 45.000004 13 TACGTTA 20 7.0338E-4 45.000004 42 CTTACGT 25 3.891231E-5 45.000004 24 CGGGTCA 35 1.2121745E-7 45.0 6 CTATGCG 45 3.8562575E-10 45.0 1 AAATGCG 35 1.2121745E-7 45.0 1 >>END_MODULE