SRR1546306_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546306_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1058929
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	4922	0.4648092553891715	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4759	0.4494163442497089	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	2639	0.2492140643990296	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGATCGG	20	7.033033E-4	45.000004	2
ACTATCG	35	1.2118107E-7	45.000004	18
CGAACGC	20	7.033033E-4	45.000004	31
ACGTTCA	30	2.1653395E-6	45.000004	12
CGGCCCA	20	7.033033E-4	45.000004	36
CGCGATC	20	7.033033E-4	45.000004	40
AGTGCGC	20	7.033033E-4	45.000004	32
CTACGTC	20	7.033033E-4	45.000004	21
TGTTACG	35	1.2118107E-7	45.000004	1
TGCTCGA	20	7.033033E-4	45.000004	30
ACTCACG	30	2.1653395E-6	45.000004	1
GTGACCG	20	7.033033E-4	45.000004	2
CCACGTG	20	7.033033E-4	45.000004	37
TCGAATC	20	7.033033E-4	45.000004	33
CTCCGTA	25	3.8905975E-5	45.0	44
ATCGTAT	50	2.1827873E-11	45.0	13
TAACATG	55	1.8189894E-12	45.0	1
TAACACG	25	3.8905975E-5	45.0	1
ACTACGG	50	2.1827873E-11	45.0	2
TCCGTAG	25	3.8905975E-5	45.0	45