##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546306_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1058929 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.26139335120674 31.0 31.0 33.0 30.0 34.0 2 31.59700980896736 31.0 31.0 34.0 30.0 34.0 3 31.661926342559322 31.0 31.0 34.0 30.0 34.0 4 35.49168168970724 37.0 35.0 37.0 33.0 37.0 5 35.41708934215608 37.0 35.0 37.0 33.0 37.0 6 35.46880763488392 37.0 35.0 37.0 33.0 37.0 7 35.857726060954036 37.0 35.0 37.0 35.0 37.0 8 35.77982565403346 37.0 35.0 37.0 35.0 37.0 9 37.5447541808752 39.0 37.0 39.0 35.0 39.0 10 37.12031212668649 39.0 37.0 39.0 33.0 39.0 11 36.76295200150341 39.0 35.0 39.0 32.0 39.0 12 35.67721443080698 37.0 35.0 39.0 31.0 39.0 13 35.15802475897817 37.0 35.0 39.0 30.0 39.0 14 36.039632496607425 38.0 35.0 40.0 30.0 41.0 15 36.43767145861526 38.0 35.0 40.0 31.0 41.0 16 36.64504419087588 38.0 35.0 40.0 32.0 41.0 17 36.61374747504318 38.0 35.0 40.0 32.0 41.0 18 36.53687168828127 37.0 35.0 40.0 32.0 41.0 19 36.37982527629331 37.0 35.0 40.0 31.0 41.0 20 36.20882703184066 36.0 35.0 40.0 31.0 41.0 21 36.04434102758542 36.0 35.0 40.0 31.0 41.0 22 35.92596198611994 36.0 34.0 40.0 31.0 41.0 23 35.91158141858425 36.0 34.0 40.0 31.0 41.0 24 35.8476677850923 35.0 34.0 40.0 31.0 41.0 25 35.79563124628752 35.0 34.0 40.0 31.0 41.0 26 35.67089200503528 35.0 34.0 40.0 31.0 41.0 27 35.56428995711705 35.0 34.0 40.0 30.0 41.0 28 35.597285559277346 36.0 34.0 40.0 30.0 41.0 29 35.595386470669894 36.0 34.0 40.0 30.0 41.0 30 35.48511939893987 36.0 34.0 40.0 30.0 41.0 31 35.24398236331236 35.0 34.0 40.0 30.0 41.0 32 35.008150688100905 35.0 34.0 40.0 29.0 41.0 33 34.802824363106495 35.0 34.0 40.0 27.0 41.0 34 34.609404407660946 35.0 34.0 40.0 27.0 41.0 35 34.39133596303435 35.0 34.0 40.0 25.0 41.0 36 34.13956459781534 35.0 33.0 40.0 23.0 41.0 37 33.923563336163234 35.0 33.0 40.0 23.0 41.0 38 33.90983909213932 35.0 33.0 40.0 23.0 41.0 39 33.91675740299869 35.0 33.0 40.0 23.0 41.0 40 33.707291045953035 35.0 33.0 40.0 23.0 41.0 41 33.6832809376266 35.0 33.0 40.0 23.0 41.0 42 33.580851974022806 35.0 33.0 39.0 23.0 41.0 43 33.508389136571004 35.0 33.0 39.0 23.0 41.0 44 33.34836707654621 35.0 33.0 39.0 23.0 41.0 45 33.29718706353306 35.0 33.0 39.0 23.0 41.0 46 33.22911167793119 35.0 33.0 39.0 23.0 41.0 47 33.213141768711594 35.0 32.0 39.0 23.0 41.0 48 33.19623128651685 35.0 33.0 39.0 23.0 41.0 49 33.24476617412499 35.0 33.0 39.0 23.0 41.0 50 33.07212759306809 35.0 32.0 39.0 22.0 41.0 51 32.847216385612256 35.0 32.0 38.0 20.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 1.0 11 4.0 12 4.0 13 5.0 14 14.0 15 35.0 16 85.0 17 261.0 18 560.0 19 1198.0 20 2013.0 21 3350.0 22 5060.0 23 7542.0 24 10772.0 25 15749.0 26 20276.0 27 22769.0 28 23927.0 29 26574.0 30 30996.0 31 38388.0 32 48635.0 33 64618.0 34 120373.0 35 175970.0 36 70128.0 37 82098.0 38 118330.0 39 169166.0 40 27.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.5302810670026 23.827659833662125 29.928352136923248 15.713706962412022 2 29.685937395236127 26.246991063612384 31.16818974643248 12.898881794719003 3 27.50939864712365 24.699011926200907 33.71812463347401 14.073464793201431 4 24.38935943769601 27.555010770316045 32.92213170099223 15.133498090995715 5 21.939903430730485 32.69048255359897 31.481714071481658 13.887899944188892 6 20.417893928676996 39.378938531289634 29.16673355815168 11.036433981881693 7 86.09198539278837 4.56952260255409 7.5876664063407455 1.7508255983167897 8 87.95471651073868 3.559634309760144 6.769481240007592 1.7161679394935827 9 83.55602689132132 4.591337096254801 9.167092411294808 2.685543601129065 10 56.55261117600897 20.386730366247406 12.75005217535831 10.310606282385315 11 50.10345358376246 18.170528902315453 20.13770517192371 11.588312341998378 12 44.65351312505371 20.431870314251473 22.72173110756245 12.192885453132362 13 20.527627442444203 44.27303435829975 22.60689810176131 12.592440097494734 14 14.088479964190235 44.818207830742196 27.08925716455022 14.004055040517352 15 11.54789414587758 21.166102732100075 53.35494636562036 13.931056756401988 16 12.851475405810966 16.284094589911128 50.366549598698306 20.4978804055796 17 14.111049938192268 16.89735572451033 29.590746877269392 39.40084746002801 18 21.164780641572758 21.6646252959358 35.85282865990071 21.31776540259073 19 28.716845038713647 23.290041164232917 25.658660778956854 22.334453018096585 20 31.694476211341836 21.796928783705045 24.864273242115384 21.644321762837734 21 21.003957772428556 27.760312542200655 27.798275427342155 23.43745425802863 22 22.623046493202093 25.189601946872735 24.634135055324766 27.553216504600403 23 18.52815438995438 31.314280749700877 24.465568513092002 25.691996347252744 24 20.126656272516854 23.035255432611628 40.538600793820926 16.29948750105059 25 15.227177648359804 26.235092248866543 36.59272718000924 21.945002922764413 26 15.034624606560024 35.558285777422284 28.334855311357042 21.072234304660654 27 15.882556809757784 33.590259592475036 29.96518180161276 20.562001796154416 28 13.663805599808864 27.608933176822998 41.13033073983242 17.596930483535722 29 13.767684141240819 23.261710652933292 40.80641856064005 22.164186645185843 30 17.33893396063381 29.688109401102437 33.67440121103492 19.298555427228834 31 28.702868653139163 25.962552730164155 25.048988175788935 20.285590440907747 32 30.208918633827196 26.82672775984037 24.814411542228044 18.149942064104394 33 27.11050504802494 27.969297280554223 24.92905567795386 19.991141993466986 34 18.22142938761711 26.890093670113863 30.5734378792157 24.31503906305333 35 20.45189054223654 25.13227987900983 31.75642559605035 22.659403982703278 36 30.736999364452195 22.97651683918374 26.535773408793222 19.750710387570837 37 20.702898872351216 30.279744912076257 29.812102605557122 19.2052536100154 38 20.53905408200172 32.16570704929226 24.952097827144218 22.343141041561804 39 20.12656183747919 30.855232031609297 28.04937819249449 20.96882793841702 40 24.019362960122915 25.552893536771588 24.811484056060415 25.61625944704508 41 17.270374123288722 22.07919511128697 28.245614200763224 32.40481656466109 42 22.09421028227577 25.5195579684757 23.609514896655018 28.776716852593516 43 22.14841599389572 27.03269057698864 25.65167258616961 25.16722084294603 44 20.748605430581275 31.20303627533102 27.05837690723363 20.989981386854076 45 17.05534554252457 37.256227754646446 21.87096585323473 23.81746084959426 46 21.76076016427919 33.023177191294224 26.10581068230259 19.110251962123996 47 21.674163234740007 26.919651836903135 28.360258336489036 23.045926591867822 48 23.781292230168404 22.63626739847525 30.34972127498633 23.232719096370012 49 19.706514789943423 22.617663696055164 32.53881988310831 25.137001630893103 50 18.30689309670431 32.514833383541294 27.548683622792463 21.62958989696193 51 17.279345451866934 34.31929808325204 23.96695151421861 24.434404950662415 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 524.0 1 714.5 2 905.0 3 4536.0 4 8167.0 5 6203.5 6 4240.0 7 4632.5 8 5025.0 9 5488.0 10 5951.0 11 6069.5 12 6188.0 13 5982.5 14 5777.0 15 5620.5 16 5464.0 17 4964.0 18 4464.0 19 4237.0 20 4010.0 21 3824.5 22 3639.0 23 3705.5 24 3772.0 25 4191.5 26 5417.0 27 6223.0 28 7762.5 29 9302.0 30 10635.5 31 11969.0 32 15493.5 33 19018.0 34 23561.5 35 28105.0 36 28061.5 37 28018.0 38 35961.5 39 43905.0 40 60301.0 41 76697.0 42 95197.5 43 113698.0 44 109853.5 45 106009.0 46 99425.5 47 92842.0 48 89571.5 49 86301.0 50 86533.5 51 86766.0 52 80280.0 53 73794.0 54 64291.0 55 54788.0 56 47839.0 57 40890.0 58 36411.5 59 31933.0 60 29371.5 61 26810.0 62 23847.0 63 20884.0 64 17632.0 65 14380.0 66 11469.0 67 8558.0 68 6690.5 69 4823.0 70 4330.5 71 3838.0 72 3372.5 73 2907.0 74 2376.0 75 1407.0 76 969.0 77 714.5 78 460.0 79 377.5 80 295.0 81 196.0 82 97.0 83 63.5 84 30.0 85 23.0 86 16.0 87 12.0 88 8.0 89 9.5 90 11.0 91 6.0 92 1.0 93 1.5 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1058929.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 19.591558893486866 #Duplication Level Percentage of deduplicated Percentage of total 1 81.59525083591438 15.985781621806503 2 6.462536838831891 2.5322234215860684 3 2.0360557836354873 1.1966852038655762 4 1.0555679204568857 0.8272088431882615 5 0.7021208788766098 0.6877821274428929 6 0.5054191103353138 0.5941168959616822 7 0.4079648391263211 0.559486702055065 8 0.32328906598951096 0.5066989420763093 9 0.2556830831236522 0.45083071629767957 >10 3.490099008259772 17.164757650388147 >50 2.05078976921574 29.95669066999403 >100 1.1137701225963073 28.368917756850674 >500 0.0 0.0 >1k 0.0014527436381690964 1.168819448487079 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 4922 0.4648092553891715 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4759 0.4494163442497089 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 2639 0.2492140643990296 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.050806050263993145 0.0 2 0.0 0.0 0.0 0.17999318179028057 0.0 3 0.0 0.0 0.0 0.24524779281708217 0.0 4 0.0 0.0 0.0 0.36329158989885063 0.0 5 0.0 0.0 0.0 0.5946574321791168 0.0 6 0.0 0.0 0.0 0.8335780774726163 0.0 7 0.0 0.0 0.0 0.9889237144322235 0.0 8 0.0 0.0 0.0 1.4567548910266883 0.0 9 0.0 0.0 0.0 1.7006805933164546 0.0 10 0.0 0.0 0.0 2.155857474863754 0.0 11 0.0 0.0 0.0 2.5198101100262624 0.0 12 0.0 0.0 0.0 2.850710482005876 0.0 13 0.0 0.0 0.0 2.975553601799554 0.0 14 0.0 0.0 0.0 3.022015640330938 0.0 15 0.0 0.0 0.0 3.090481042638364 0.0 16 0.0 0.0 0.0 3.2445990241083207 0.0 17 0.0 0.0 0.0 3.424969946049263 0.0 18 0.0 0.0 0.0 3.6980760749776427 0.0 19 0.0 0.0 0.0 3.8130035158164524 0.0 20 0.0 0.0 0.0 3.9310473128982206 0.0 21 0.0 0.0 0.0 4.077043881128952 0.0 22 0.0 0.0 0.0 4.221435053719371 0.0 23 0.0 0.0 0.0 4.395667698212061 0.0 24 0.0 0.0 0.0 4.52504369981368 0.0 25 0.0 0.0 0.0 4.620234217780418 0.0 26 0.0 0.0 0.0 4.722318493496731 0.0 27 0.0 0.0 0.0 4.823363983798725 0.0 28 0.0 0.0 0.0 4.926014869741031 0.0 29 0.0 0.0 0.0 5.036126123658905 0.0 30 0.0 0.0 0.0 5.197137862878437 0.0 31 0.0 0.0 0.0 5.3231142031241 0.0 32 0.0 0.0 0.0 5.428125965008041 0.0 33 0.0 0.0 0.0 5.540881399980546 0.0 34 0.0 0.0 0.0 5.664213559171578 0.0 35 0.0 0.0 0.0 5.828719394784731 0.0 36 0.0 0.0 0.0 5.959228616838334 0.0 37 0.0 0.0 0.0 6.082183035878704 0.0 38 0.0 0.0 0.0 6.209481466651683 0.0 39 0.0 0.0 0.0 6.338196422989643 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TGATCGG 20 7.033033E-4 45.000004 2 ACTATCG 35 1.2118107E-7 45.000004 18 CGAACGC 20 7.033033E-4 45.000004 31 ACGTTCA 30 2.1653395E-6 45.000004 12 CGGCCCA 20 7.033033E-4 45.000004 36 CGCGATC 20 7.033033E-4 45.000004 40 AGTGCGC 20 7.033033E-4 45.000004 32 CTACGTC 20 7.033033E-4 45.000004 21 TGTTACG 35 1.2118107E-7 45.000004 1 TGCTCGA 20 7.033033E-4 45.000004 30 ACTCACG 30 2.1653395E-6 45.000004 1 GTGACCG 20 7.033033E-4 45.000004 2 CCACGTG 20 7.033033E-4 45.000004 37 TCGAATC 20 7.033033E-4 45.000004 33 CTCCGTA 25 3.8905975E-5 45.0 44 ATCGTAT 50 2.1827873E-11 45.0 13 TAACATG 55 1.8189894E-12 45.0 1 TAACACG 25 3.8905975E-5 45.0 1 ACTACGG 50 2.1827873E-11 45.0 2 TCCGTAG 25 3.8905975E-5 45.0 45 >>END_MODULE