##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546305_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3959557 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.095036641725326 31.0 31.0 33.0 30.0 34.0 2 31.435637117990726 31.0 31.0 34.0 30.0 34.0 3 31.38824267462244 31.0 31.0 34.0 30.0 34.0 4 35.31519182575222 37.0 35.0 37.0 33.0 37.0 5 35.2527770152065 37.0 35.0 37.0 33.0 37.0 6 35.29996183916534 37.0 35.0 37.0 32.0 37.0 7 35.777561732284695 37.0 35.0 37.0 35.0 37.0 8 35.69305253087656 37.0 35.0 37.0 35.0 37.0 9 37.443779948110354 39.0 37.0 39.0 35.0 39.0 10 36.89414699674737 39.0 37.0 39.0 32.0 39.0 11 36.62221480837376 39.0 35.0 39.0 32.0 39.0 12 36.19746350412432 38.0 35.0 39.0 32.0 39.0 13 36.00364459963577 38.0 35.0 39.0 31.0 39.0 14 36.96128354762919 39.0 35.0 41.0 31.0 41.0 15 37.1537558368272 39.0 35.0 41.0 32.0 41.0 16 37.17637705430178 39.0 35.0 41.0 32.0 41.0 17 37.10828660883023 39.0 35.0 41.0 32.0 41.0 18 36.96296883717042 39.0 35.0 40.0 32.0 41.0 19 36.78679458333344 38.0 35.0 40.0 31.0 41.0 20 36.567850393364715 38.0 35.0 40.0 31.0 41.0 21 36.4368433135323 38.0 35.0 40.0 31.0 41.0 22 36.35849464978027 38.0 35.0 40.0 31.0 41.0 23 36.274131929405236 38.0 35.0 40.0 30.0 41.0 24 36.22060902267602 38.0 35.0 40.0 30.0 41.0 25 36.146498206743836 38.0 35.0 40.0 30.0 41.0 26 36.040969987299086 38.0 35.0 40.0 30.0 41.0 27 35.93367490353087 38.0 35.0 40.0 30.0 41.0 28 35.890074066366516 38.0 35.0 40.0 30.0 41.0 29 35.75945819191389 37.0 34.0 40.0 30.0 41.0 30 35.54825249390273 37.0 34.0 40.0 29.0 41.0 31 35.29480343381848 37.0 34.0 40.0 27.0 41.0 32 35.02932247218565 37.0 34.0 40.0 25.0 41.0 33 34.701201169726815 37.0 33.0 40.0 24.0 41.0 34 34.33790345738172 37.0 33.0 40.0 23.0 41.0 35 34.04762527727218 37.0 33.0 40.0 21.0 41.0 36 33.80452080876724 37.0 33.0 40.0 20.0 41.0 37 33.6215654933115 37.0 33.0 40.0 18.0 41.0 38 33.49705282686927 36.0 32.0 40.0 18.0 41.0 39 33.417941198977566 36.0 32.0 40.0 18.0 41.0 40 33.20615816365316 36.0 32.0 40.0 18.0 41.0 41 33.08250518934315 36.0 32.0 40.0 16.0 41.0 42 32.940894903141945 36.0 31.0 40.0 15.0 41.0 43 32.920608290270856 36.0 31.0 40.0 15.0 41.0 44 32.67901863769104 35.0 31.0 40.0 15.0 41.0 45 32.66440942762031 35.0 31.0 40.0 15.0 41.0 46 32.5855614655882 35.0 31.0 40.0 15.0 41.0 47 32.511278660718865 35.0 31.0 40.0 15.0 41.0 48 32.40690360057956 35.0 31.0 39.0 15.0 41.0 49 32.41005774130793 35.0 31.0 39.0 15.0 41.0 50 32.27749063847294 35.0 31.0 39.0 14.0 41.0 51 32.071631245616615 35.0 30.0 39.0 13.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 2.0 10 3.0 11 11.0 12 15.0 13 31.0 14 48.0 15 179.0 16 561.0 17 1447.0 18 3310.0 19 6463.0 20 10947.0 21 17037.0 22 25505.0 23 37367.0 24 53541.0 25 78271.0 26 101533.0 27 108209.0 28 106573.0 29 109432.0 30 121744.0 31 140927.0 32 168399.0 33 210796.0 34 317060.0 35 411987.0 36 305924.0 37 382090.0 38 527593.0 39 712444.0 40 106.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.624930263663334 23.60185748052118 28.383149933186967 18.390062322628516 2 34.774521493187244 24.673846089347872 28.0327066891574 12.518925728307483 3 26.487180257791465 23.932929870690078 36.4220795407163 13.157810330802159 4 24.009226284657604 26.528826330824383 34.853141399404024 14.60880598511399 5 21.345670740438894 29.969362734265477 34.411248531085675 14.273717994209958 6 19.242834488807713 38.66629524464479 31.786459949938845 10.304410316608651 7 82.81911335030662 3.635305666770298 11.733863156913765 1.8117178260093236 8 83.6001603209652 3.023823119606562 11.354022684860958 2.021993874567281 9 78.69478833111886 5.1081724546458105 13.18788945328985 3.0091497609454794 10 39.36601998657931 28.505385829778433 19.686596253065684 12.441997930576578 11 32.26866035771173 22.819093146026184 29.015846974800464 15.896399521461618 12 30.680502894642004 21.064553433629065 31.81724622224153 16.437697449487406 13 22.580278551363193 29.132021587263424 31.089488041212693 17.19821182016069 14 18.115864981865396 32.15210691499074 32.079548292902466 17.6524798102414 15 17.18821070134866 23.31505771984088 42.210681649487555 17.286049929322903 16 19.28965790870039 20.40735870199621 39.78311210067187 20.51987128863153 17 19.145399346442037 21.24586159512289 32.49926696345071 27.109472094984362 18 21.669343312900914 22.463775619343277 35.843100629691655 20.023780438064158 19 25.561218085760608 24.891547210963246 29.42877195605468 20.118462747221468 20 26.828455809576678 23.506695319703695 29.700317485011578 19.96453138570805 21 22.731734888524148 25.581472876890015 31.52256679219418 20.16422544239166 22 22.13328410223669 23.313820207664644 30.1804722093911 24.372423480707564 23 20.241279516875245 26.8516402213682 29.830988668681872 23.07609159307468 24 20.52292718604632 23.94639097252546 36.870437778771716 18.660244062656503 25 20.247997440117672 25.66913419859848 33.2960732728434 20.78679508844045 26 19.290213526412174 28.514932352280827 30.430727477846638 21.764126643460365 27 18.735353475148862 27.343513428396154 31.98130497931966 21.939828117135328 28 17.829343030040988 25.78088912471774 35.71295980838261 20.676808036858667 29 18.68587824344996 23.43974338543428 35.58787005718064 22.28650831393512 30 20.97628598350775 26.513319545595632 32.93865955206605 19.571734918830565 31 23.93348548840186 26.182322921478335 29.95923533870077 19.924956251419033 32 24.700692526967032 25.462545431218697 29.209883832964138 20.62687820885013 33 24.213239006282773 25.90898426263342 28.58877899724641 21.288997733837398 34 19.718796824998353 25.830642165272526 31.48849732432189 22.96206368540723 35 20.871981385796442 25.649889621490484 31.290116545866116 22.188012446846958 36 24.447457127148315 26.729909431787448 27.93160952096409 20.891023920100153 37 21.380169549270285 29.043956179946395 29.42271067192618 20.153163598857144 38 21.44224720088636 28.257832883830186 28.927377481874867 21.372542433408587 39 21.284527536792627 28.782740089358484 27.926659472259146 22.00607290158975 40 23.214591935410954 25.463050538229403 28.7455389580198 22.576818568339842 41 20.183217465994304 25.206052091180908 28.631233241496464 25.979497201328332 42 21.536323381630822 26.74296644801426 27.119523724497462 24.601186445857454 43 21.587970573475772 26.275540420304594 28.64002210348279 23.496466902736845 44 21.72341501839726 27.17738373257412 29.06158441462012 22.037616834408496 45 19.529735270890153 30.57599625412641 26.96768855707848 22.926579917904956 46 21.503516681285305 28.614185879885046 28.133829112701243 21.748468326128403 47 21.191840400327614 27.803792191904297 28.676061488696842 22.32830591907125 48 20.975452556940084 25.848219889245183 30.172643050725117 23.003684503089612 49 20.98441820638016 25.271564470469805 30.725533184646665 23.01848413850337 50 20.139955050527117 28.202801475013494 29.173314085388846 22.483929389070546 51 19.482507765388906 28.555896530849285 28.69063382595578 23.270961877806027 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1683.0 1 2641.5 2 3600.0 3 38986.0 4 74372.0 5 53165.5 6 31959.0 7 31979.0 8 31999.0 9 32963.5 10 33928.0 11 34063.0 12 34198.0 13 33550.0 14 32902.0 15 31894.5 16 30887.0 17 29561.0 18 28235.0 19 26828.5 20 25422.0 21 24417.0 22 23412.0 23 24094.5 24 24777.0 25 26786.0 26 30699.0 27 32603.0 28 39038.5 29 45474.0 30 52672.0 31 59870.0 32 72129.5 33 84389.0 34 101965.5 35 119542.0 36 123820.5 37 128099.0 38 143950.0 39 159801.0 40 183609.5 41 207418.0 42 238247.0 43 269076.0 44 280687.0 45 292298.0 46 300495.5 47 308693.0 48 305457.0 49 302221.0 50 294821.5 51 287422.0 52 261049.5 53 234677.0 54 220185.0 55 205693.0 56 192637.5 57 179582.0 58 172169.5 59 164757.0 60 148456.0 61 132155.0 62 116026.5 63 99898.0 64 90246.5 65 80595.0 66 66455.0 67 52315.0 68 44656.5 69 36998.0 70 31868.0 71 26738.0 72 22464.0 73 18190.0 74 15025.0 75 9424.0 76 6988.0 77 4763.5 78 2539.0 79 2176.0 80 1813.0 81 1392.0 82 971.0 83 665.5 84 360.0 85 283.0 86 206.0 87 144.5 88 83.0 89 58.5 90 34.0 91 25.5 92 17.0 93 13.0 94 9.0 95 6.5 96 4.0 97 2.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 3959557.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 22.912279128948875 #Duplication Level Percentage of deduplicated Percentage of total 1 80.11703656860541 18.356639048440915 2 7.21645662394573 3.306909369795932 3 2.6424830724237176 1.8163592924668392 4 1.3723024892255233 1.257703107299462 5 0.8774493127082381 1.0052181787137748 6 0.6778925828858345 0.931923844711461 7 0.502144847646917 0.8053698038714767 8 0.40825771648499043 0.7483291805321097 9 0.3518863057961283 0.7256265534049997 >10 3.782090098056437 19.8647154935362 >50 1.1874608039787207 19.65675637163659 >100 0.8577053140995778 28.718870357605443 >500 0.004817596035136501 0.7390980394607263 >1k 0.001680556756442858 0.4881456070569768 >5k 2.2407423419238106E-4 0.4153704284701799 >10k+ 1.1203711709619053E-4 1.162965322996912 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 45304 1.1441684006569421 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 9915 0.2504068005587494 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 6266 0.15825002645497968 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.034119978573360604 0.0 2 0.0 0.0 0.0 0.1604977526526326 0.0 3 0.0 0.0 0.0 0.29172455403470643 0.0 4 0.0 0.0 0.0 0.4318664941557856 0.0 5 0.0 0.0 0.0 0.7465734171777297 0.0 6 0.0 0.0 0.0 1.2099080781006561 0.0 7 0.0 0.0 0.0 1.5057997649737078 0.0 8 0.0 0.0 0.0 2.1302383069621174 0.0 9 0.0 0.0 0.0 2.502552684555368 0.0 10 0.0 0.0 0.0 2.9955371270068847 0.0 11 0.0 0.0 0.0 3.382196543704258 0.0 12 0.0 0.0 0.0 3.7012726423688305 0.0 13 0.0 0.0 0.0 3.860987479154865 0.0 14 0.0 0.0 0.0 3.9350866776258053 0.0 15 0.0 0.0 0.0 4.016484672401483 0.0 16 0.0 0.0 0.0 4.18165466490317 0.0 17 0.0 0.0 0.0 4.373570073621872 0.0 18 0.0 0.0 0.0 4.64458524021753 0.0 19 0.0 0.0 0.0 4.769952800275385 0.0 20 0.0 0.0 0.0 4.915878215669076 0.0 21 0.0 0.0 0.0 5.076325457620638 0.0 22 0.0 0.0 0.0 5.252405761553629 0.0 23 0.0 0.0 0.0 5.452125073587777 0.0 24 0.0 0.0 0.0 5.612092463879167 0.0 25 0.0 0.0 0.0 5.73708119367899 0.0 26 0.0 0.0 0.0 5.865984502811805 0.0 27 0.0 0.0 0.0 6.017844925581321 0.0 28 0.0 0.0 0.0 6.159805250940951 0.0 29 0.0 0.0 0.0 6.318863448613064 0.0 30 0.0 0.0 0.0 6.530427520048328 0.0 31 0.0 0.0 0.0 6.6864803310067265 0.0 32 0.0 0.0 0.0 6.841927013552274 0.0 33 0.0 0.0 0.0 7.002172212699552 0.0 34 0.0 0.0 0.0 7.166609800035711 0.0 35 0.0 0.0 0.0 7.364005619820601 0.0 36 0.0 0.0 0.0 7.533898362872412 0.0 37 0.0 0.0 0.0 7.7103069863623634 0.0 38 0.0 0.0 0.0 7.905783399506561 0.0 39 0.0 0.0 0.0 8.16293337865827 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 33685 0.0 43.93128 1 TAATGCG 180 0.0 40.000004 1 ATACTAT 5110 0.0 39.055775 45 CGAATAT 1330 0.0 38.57143 14 GCTACGA 1330 0.0 38.57143 10 AGGGCGA 4050 0.0 38.5 6 GTTTTTT 39230 0.0 38.46737 2 TAAGGGA 4450 0.0 38.32584 4 CGTAAGG 475 0.0 37.894737 2 GCGATGT 815 0.0 37.822086 9 AAGGGAT 5260 0.0 37.770912 5 GCGCGAC 1995 0.0 37.55639 9 CGACTTA 30 1.14042596E-4 37.500004 43 AGCTACG 1365 0.0 37.252747 9 TACGAAT 1385 0.0 37.03971 12 TGATTCG 1005 0.0 36.9403 15 TGGGCGA 2295 0.0 36.862747 6 GGCGATT 2505 0.0 36.826347 8 GGGCGAT 7985 0.0 36.772076 7 ATATCAC 1605 0.0 36.72897 30 >>END_MODULE