##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546304_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 4309467 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.07800198957319 31.0 31.0 33.0 30.0 34.0 2 31.408923655756038 31.0 31.0 34.0 30.0 34.0 3 31.4872723239324 31.0 31.0 34.0 30.0 34.0 4 35.35674713369426 37.0 35.0 37.0 33.0 37.0 5 35.26932727411534 37.0 35.0 37.0 33.0 37.0 6 35.303073210677795 37.0 35.0 37.0 32.0 37.0 7 35.73882408195723 37.0 35.0 37.0 35.0 37.0 8 35.63380088535311 37.0 35.0 37.0 35.0 37.0 9 37.36957076130297 39.0 37.0 39.0 35.0 39.0 10 36.86005833203967 39.0 37.0 39.0 32.0 39.0 11 36.57229420714905 39.0 35.0 39.0 32.0 39.0 12 35.96454805199808 37.0 35.0 39.0 31.0 39.0 13 35.67196569784616 37.0 35.0 39.0 30.0 39.0 14 36.56799808421784 38.0 35.0 41.0 31.0 41.0 15 36.83308678312191 38.0 35.0 41.0 31.0 41.0 16 36.910552743529536 38.0 35.0 41.0 32.0 41.0 17 36.83071247557993 38.0 35.0 41.0 31.0 41.0 18 36.73995624052812 38.0 35.0 40.0 31.0 41.0 19 36.630685650916924 38.0 35.0 40.0 31.0 41.0 20 36.443352971492764 38.0 35.0 40.0 31.0 41.0 21 36.26803198632221 38.0 35.0 40.0 30.0 41.0 22 36.18017054081166 38.0 35.0 40.0 30.0 41.0 23 36.078989582702455 38.0 34.0 40.0 30.0 41.0 24 36.05333118921667 38.0 34.0 40.0 30.0 41.0 25 35.993417283390265 38.0 34.0 40.0 30.0 41.0 26 35.88156029504345 37.0 34.0 40.0 30.0 41.0 27 35.74591057316369 37.0 34.0 40.0 30.0 41.0 28 35.67936406056712 37.0 34.0 40.0 29.0 41.0 29 35.582795737848784 37.0 34.0 40.0 29.0 41.0 30 35.400865118586594 37.0 34.0 40.0 28.0 41.0 31 35.20148709805644 37.0 34.0 40.0 27.0 41.0 32 35.012357676715006 37.0 34.0 40.0 26.0 41.0 33 34.79718025454192 37.0 33.0 40.0 25.0 41.0 34 34.55027965175276 37.0 33.0 40.0 24.0 41.0 35 34.32814754121566 36.0 33.0 40.0 23.0 41.0 36 34.06988752901461 36.0 33.0 40.0 23.0 41.0 37 33.887815360925146 36.0 33.0 40.0 23.0 41.0 38 33.7695494593647 36.0 33.0 40.0 22.0 41.0 39 33.68673945060955 36.0 33.0 40.0 22.0 41.0 40 33.470974020685155 35.0 32.0 40.0 21.0 41.0 41 33.35139821235433 35.0 32.0 40.0 20.0 41.0 42 33.21630818846043 35.0 32.0 40.0 20.0 41.0 43 33.16653312346979 35.0 32.0 40.0 20.0 41.0 44 32.994456391010765 35.0 32.0 39.0 19.0 41.0 45 32.926722260548694 35.0 31.0 39.0 20.0 41.0 46 32.85273399239396 35.0 31.0 39.0 20.0 41.0 47 32.76970817968904 35.0 31.0 39.0 20.0 41.0 48 32.67671802568624 35.0 31.0 39.0 19.0 41.0 49 32.68113968618393 35.0 31.0 39.0 19.0 41.0 50 32.52301293872305 35.0 31.0 39.0 18.0 40.0 51 32.30029235634012 35.0 31.0 38.0 18.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 5.0 11 8.0 12 15.0 13 32.0 14 94.0 15 230.0 16 673.0 17 1667.0 18 3537.0 19 6662.0 20 11534.0 21 17966.0 22 26665.0 23 37523.0 24 52060.0 25 70393.0 26 89348.0 27 101303.0 28 108761.0 29 119699.0 30 138559.0 31 163045.0 32 197083.0 33 249864.0 34 392375.0 35 511923.0 36 343099.0 37 425197.0 38 562964.0 39 677080.0 40 103.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.57717624940625 23.023752125262824 28.012443302153144 14.386628323177785 2 32.14986911374423 24.486392400730765 29.394725612239288 13.969012873285722 3 28.35060577096889 24.878552266440373 33.03965432384098 13.731187638749756 4 25.63924958701389 27.04301947317383 30.965871185462145 16.35185975435013 5 23.077053380383237 31.87816497956708 30.318877021218633 14.725904618831054 6 20.438003121963806 40.862570707700044 27.806362132486456 10.893064037849692 7 84.35931868140538 4.4979344313345475 8.16393303394596 2.9788138533141106 8 84.61658947614636 3.926680492042287 8.648470912992256 2.808259118819102 9 79.93505925442751 5.508105758786411 10.800802048141916 3.756032938644153 10 47.913349841175254 23.94054763616939 15.850150378225427 12.295952144429927 11 38.93337621566658 23.878939089219152 22.725385761162574 14.462298933951692 12 34.000747656264686 21.240260106412233 27.031904409524426 17.727087827798655 13 24.102516622125194 31.72712541945442 26.779251355213994 17.39110660320638 14 20.057167162435633 33.695767945316675 28.58351160363915 17.663553288608544 15 17.89258393207327 21.53864967523826 42.26209412904194 18.306672263646526 16 20.969739413249943 18.428543483451666 39.56463757583014 21.037079527468247 17 20.31791866604385 18.934684962200663 29.480490278728205 31.26690609302728 18 23.72590392268928 22.31728424884098 32.505481536347766 21.451330292121973 19 29.20546786876428 24.018793971505062 26.38314668612151 20.39259147360915 20 30.803090034103985 23.507965138148172 24.95886382237061 20.730081005377233 21 25.24836598122227 27.14036329782778 27.41062873900647 20.200641981943473 22 25.863221600258225 22.984907414304367 25.736732640022534 25.415138345414874 23 23.211269514304206 27.976151111030667 25.011631368798042 23.800948005867085 24 22.276211884207488 25.347218113052033 33.16897426062202 19.207595742118457 25 21.209861915638292 24.830124003734106 31.031447740521045 22.92856634010656 26 20.270836277432917 28.891623952567684 27.949976180348983 22.887563589650416 27 20.368644196602503 27.65956903719184 28.794883450784052 23.176903315421605 28 20.12668852087741 24.605989557409302 34.069387235126754 21.19793468658653 29 19.697888393158596 24.227218818475695 33.57287571757714 22.50201707078857 30 21.431026157063044 26.667033301334016 30.138437073540647 21.763503468062293 31 28.005969183660067 24.402785773739534 25.18940277301114 22.401842269589256 32 28.497375661537728 24.792509143242075 24.872008533769954 21.838106661450244 33 27.124676903199397 25.255977131278645 24.537674844708175 23.08167112081378 34 21.616710372767674 26.557808657079867 28.06683517938529 23.75864579076716 35 23.61015875049049 25.681807054097412 28.19033072999515 22.517703465416954 36 27.753548176607456 25.859369615778473 25.064514938854387 21.322567268759688 37 23.09812327139296 28.865240179353968 25.858418222021424 22.17821832723165 38 23.97632932332467 29.22075978305438 23.535764399634573 23.26714649398638 39 22.36327601534018 27.7590476966177 25.24282005176046 24.634856236281657 40 24.366006283375647 23.713303756589852 26.74036023480398 25.18032972523052 41 21.562991432583196 22.939565380127057 26.71358198125197 28.783861206037777 42 22.884523770573022 24.290150034795484 24.42657061766571 28.398755576965783 43 23.194492497564084 24.768051362268235 26.182565036465068 25.854891103702617 44 22.479415667877255 26.4841104479974 27.384430603599007 23.65204328052634 45 20.53298006458803 29.993013057067152 25.032005118034316 24.442001760310497 46 23.106082492336057 27.30418866184612 27.109176146377266 22.480552699440555 47 23.618373223417187 25.4427751738208 27.028539724286087 23.910311878475923 48 23.566371432940546 23.56059345622092 28.7100469733264 24.162988137512134 49 22.716544760639774 23.00994531342275 29.10742790233688 25.1660820236006 50 21.381368043890348 28.023001452383788 27.056338985772488 23.53929151795338 51 21.62330051488966 28.72865716340327 25.15854048772157 24.489501833985504 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1809.0 1 3132.0 2 4455.0 3 23277.0 4 42099.0 5 30253.5 6 18408.0 7 19203.0 8 19998.0 9 21067.5 10 22137.0 11 22252.0 12 22367.0 13 22095.0 14 21823.0 15 21178.5 16 20534.0 17 19438.0 18 18342.0 19 17466.5 20 16591.0 21 17125.5 22 17660.0 23 18295.5 24 18931.0 25 22806.5 26 30238.0 27 33794.0 28 35154.5 29 36515.0 30 49321.5 31 62128.0 32 64855.5 33 67583.0 34 78000.5 35 88418.0 36 97182.0 37 105946.0 38 124486.0 39 143026.0 40 180539.5 41 218053.0 42 253027.0 43 288001.0 44 294906.5 45 301812.0 46 298392.5 47 294973.0 48 302636.0 49 310299.0 50 316277.0 51 322255.0 52 302166.5 53 282078.0 54 263770.5 55 245463.0 56 232417.5 57 219372.0 58 214341.5 59 209311.0 60 200815.5 61 192320.0 62 187969.5 63 183619.0 64 169042.5 65 154466.0 66 128700.5 67 102935.0 68 85267.5 69 67600.0 70 54407.0 71 41214.0 72 34021.5 73 26829.0 74 22035.0 75 13746.5 76 10252.0 77 8477.0 78 6702.0 79 4838.0 80 2974.0 81 2172.5 82 1371.0 83 979.0 84 587.0 85 417.5 86 248.0 87 193.5 88 139.0 89 101.0 90 63.0 91 47.0 92 31.0 93 18.5 94 6.0 95 5.5 96 5.0 97 3.5 98 2.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 4309467.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 19.26946507354427 #Duplication Level Percentage of deduplicated Percentage of total 1 81.6854939935327 15.740357735235888 2 7.48199808092322 2.8834820140135053 3 2.438758466421455 1.4098071327455588 4 1.1832838769753664 0.9120498935785951 5 0.7307098288073346 0.7040193762549225 6 0.46861823645600625 0.5418013644128954 7 0.3736558619244634 0.504010400661497 8 0.2726771898228237 0.42034748685144824 9 0.23329639260135673 0.4045947020114144 >10 2.5490375330474677 11.52538127050335 >50 1.111090295179306 15.745815982308143 >100 1.4604317422751725 46.240287909767716 >500 0.008150551513711225 0.9890591344121029 >1k 0.0024330004518540965 0.7755088129252623 >5k 0.0 0.0 >10k+ 3.649500677781145E-4 1.2034767843177152 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 24646 0.5719036716141462 No Hit GCTCAACTTGACCCTGCATTAGAAATTGAAGACTGTAAATACAAAATAAAA 15831 0.3673540138490444 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 10863 0.2520729361658878 No Hit GCTCAACTTGACCCTGCATTAGAAATTGAAGACTGTAAATACCTGTCTCTT 4465 0.10360910061499484 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.3204725781633784E-5 0.0 0.0 0.0445762782265185 0.0 2 2.3204725781633784E-5 0.0 0.0 0.17039230141453687 0.0 3 2.3204725781633784E-5 0.0 0.0 0.2441601246743507 0.0 4 2.3204725781633784E-5 0.0 0.0 0.3788635578367348 0.0 5 2.3204725781633784E-5 0.0 0.0 0.6572274483132137 0.0 6 2.3204725781633784E-5 0.0 0.0 1.0167614695738476 0.0 7 2.3204725781633784E-5 0.0 0.0 1.246233002828424 0.0 8 2.3204725781633784E-5 0.0 0.0 1.9242750901677632 0.0 9 2.3204725781633784E-5 0.0 0.0 2.2559402357646547 0.0 10 2.3204725781633784E-5 0.0 0.0 2.754029674667424 0.0 11 2.3204725781633784E-5 0.0 0.0 3.1053492230013595 0.0 12 4.640945156326757E-5 0.0 0.0 3.4111410993517297 0.0 13 4.640945156326757E-5 0.0 0.0 3.567889022006666 0.0 14 4.640945156326757E-5 0.0 0.0 3.6192874896129847 0.0 15 4.640945156326757E-5 0.0 0.0 3.7192070388286997 0.0 16 4.640945156326757E-5 0.0 0.0 3.870246598941354 0.0 17 4.640945156326757E-5 0.0 0.0 4.045651121124724 0.0 18 4.640945156326757E-5 0.0 0.0 4.303269986752422 0.0 19 4.640945156326757E-5 0.0 0.0 4.417924536839474 0.0 20 4.640945156326757E-5 0.0 0.0 4.551142867551834 0.0 21 4.640945156326757E-5 0.0 0.0 4.7014166717136945 0.0 22 4.640945156326757E-5 0.0 0.0 4.859928153528035 0.0 23 4.640945156326757E-5 0.0 0.0 5.051297527049169 0.0 24 4.640945156326757E-5 0.0 0.0 5.198206645972692 0.0 25 4.640945156326757E-5 0.0 0.0 5.355673915126859 0.0 26 4.640945156326757E-5 0.0 0.0 5.472834575598328 2.3204725781633784E-5 27 4.640945156326757E-5 0.0 0.0 5.592756598437812 2.3204725781633784E-5 28 4.640945156326757E-5 0.0 0.0 5.718340574368013 2.3204725781633784E-5 29 4.640945156326757E-5 0.0 0.0 5.857244062896873 2.3204725781633784E-5 30 4.640945156326757E-5 0.0 0.0 6.0354795616256025 2.3204725781633784E-5 31 4.640945156326757E-5 0.0 0.0 6.184082625531185 2.3204725781633784E-5 32 4.640945156326757E-5 0.0 0.0 6.351087036981603 2.3204725781633784E-5 33 4.640945156326757E-5 0.0 0.0 6.495954140036344 2.3204725781633784E-5 34 4.640945156326757E-5 0.0 0.0 6.677461505100283 2.3204725781633784E-5 35 4.640945156326757E-5 0.0 0.0 6.863168925530698 2.3204725781633784E-5 36 4.640945156326757E-5 0.0 0.0 7.015554359738687 2.3204725781633784E-5 37 4.640945156326757E-5 0.0 0.0 7.179194085950768 2.3204725781633784E-5 38 4.640945156326757E-5 0.0 0.0 7.361188750256122 2.3204725781633784E-5 39 4.640945156326757E-5 0.0 0.0 7.618923639512729 2.3204725781633784E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTATTA 45 3.8562575E-10 45.0 42 CGTTTTT 18580 0.0 43.31674 1 TCGATAG 170 0.0 41.02941 1 TGCATTA 2955 0.0 40.964466 15 ACTTGAC 3360 0.0 40.44643 6 TAATGCG 135 0.0 40.0 1 ATTAGCG 390 0.0 39.807693 1 AACTTGA 3420 0.0 39.736843 5 CATTAGA 3035 0.0 39.66227 17 TCGTAAG 210 0.0 39.642857 1 GCATTAG 3050 0.0 39.614754 16 AGTACGG 375 0.0 39.600002 2 CTCAACT 3520 0.0 39.56676 2 TCAACTT 3550 0.0 39.169014 3 CGGGTAT 305 0.0 39.09836 6 GCTCAAC 3575 0.0 39.083916 1 TAGGGAC 2780 0.0 38.848923 5 CTTGACC 3510 0.0 38.71795 7 CGGTCTA 555 0.0 38.51351 31 TACGGGA 920 0.0 38.152172 4 >>END_MODULE