Basic Statistics
Measure | Value |
---|---|
Filename | SRR1546302_1.fastq.gz |
File type | Conventional base calls |
Encoding | Illumina 1.5 |
Total Sequences | 2723872 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 44 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 19450 | 0.7140570482019712 | No Hit |
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC | 6190 | 0.2272500323069513 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTTCTA | 40 | 6.8212103E-9 | 45.0 | 40 |
CGTTTTT | 18030 | 0.0 | 43.901833 | 1 |
ACATACG | 310 | 0.0 | 42.09677 | 17 |
CGGTCTA | 210 | 0.0 | 41.785717 | 31 |
CGTAAGG | 495 | 0.0 | 40.454544 | 2 |
GCGTTAG | 190 | 0.0 | 40.26316 | 1 |
AGGGCGA | 3000 | 0.0 | 38.55 | 6 |
TACGGGA | 1005 | 0.0 | 38.50746 | 4 |
CATACGA | 340 | 0.0 | 38.38235 | 18 |
ACACGAC | 310 | 0.0 | 37.741936 | 26 |
TAACGGG | 730 | 0.0 | 37.60274 | 3 |
ACGGGAT | 1425 | 0.0 | 37.57895 | 5 |
CGTTAGG | 450 | 0.0 | 37.500004 | 2 |
CGCATTA | 30 | 1.1403329E-4 | 37.499996 | 31 |
GTTTTTT | 21850 | 0.0 | 37.451946 | 2 |
TAGGGCG | 1110 | 0.0 | 37.2973 | 5 |
ACGGACG | 145 | 0.0 | 37.24138 | 1 |
TAGTGCG | 145 | 0.0 | 37.24138 | 1 |
GACACGA | 315 | 0.0 | 37.142857 | 25 |
GACCGAT | 1615 | 0.0 | 37.058823 | 9 |