SRR1546301_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546301_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2097900
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10597	0.5051241717908385	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	10172	0.48486581819915153	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2334	0.11125411125411126	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGTACGT	25	3.8919097E-5	45.000004	14
GTACCGG	45	3.8562575E-10	45.000004	24
TCCGCAT	30	2.1663618E-6	45.000004	43
CACGGAT	20	7.034618E-4	45.000004	23
TCCGATT	30	2.1663618E-6	45.000004	10
CGTTGCA	30	2.1663618E-6	45.000004	24
TTACTCG	25	3.8919097E-5	45.000004	44
CGTCTAC	20	7.034618E-4	45.000004	16
ATTCGAC	20	7.034618E-4	45.000004	14
CAATTCG	20	7.034618E-4	45.000004	1
TGACGTT	30	2.1663618E-6	45.000004	21
TAACGAA	25	3.8919097E-5	45.000004	19
CGACAAA	20	7.034618E-4	45.000004	31
TCTAGCG	90	0.0	45.000004	1
CGTTACA	20	7.034618E-4	45.000004	45
TAGCACG	110	0.0	45.000004	1
ACTAGTC	40	6.8193913E-9	45.000004	10
TCTACGT	25	3.8919097E-5	45.000004	35
CGTACGT	25	3.8919097E-5	45.000004	42
TACTCGA	25	3.8919097E-5	45.000004	45