SRR1546300_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546300_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	253321
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	973	0.3840976468591234	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	631	0.24909107417071621	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	390	0.1539548635920433	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTTGGCG	30	2.1587803E-6	45.000004	1
TCACGAG	20	7.022864E-4	45.0	1
TCACGAC	20	7.022864E-4	45.0	25
AGCGTAA	20	7.022864E-4	45.0	37
TTAATCC	40	6.7793735E-9	45.0	41
CGTATAC	20	7.022864E-4	45.0	35
CGACGGT	20	7.022864E-4	45.0	28
GACACGA	20	7.022864E-4	45.0	25
TAAACGG	20	7.022864E-4	45.0	2
CACGACC	25	3.8821687E-5	45.0	27
TACGGGA	40	6.7793735E-9	45.0	4
CGACAGG	20	7.022864E-4	45.0	2
TAACGCC	20	7.022864E-4	45.0	12
AACGCCG	20	7.022864E-4	45.0	13
CTCATGG	20	7.022864E-4	45.0	2
GCCTCAA	20	7.022864E-4	45.0	23
GTCAAGC	25	3.8821687E-5	45.0	16
TCATCGA	40	6.7793735E-9	45.0	16
ATAACGG	20	7.022864E-4	45.0	2
ATAACGC	20	7.022864E-4	45.0	11