SRR1546298_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546298_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2502962
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	13571	0.5421976042784509	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10316	0.4121516826863532	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	2929	0.11702135310084612	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGGTACG	75	0.0	45.000004	1
TACCCGT	30	2.166531E-6	45.000004	41
GTCGATA	30	2.166531E-6	45.000004	10
ACTTGCA	30	2.166531E-6	45.000004	27
ATCGGAT	30	2.166531E-6	45.000004	39
TAGTACG	115	0.0	45.000004	1
GTGCCGA	30	2.166531E-6	45.000004	42
ATTTACG	85	0.0	45.0	1
ACCGGGT	35	1.212702E-7	45.0	29
CGAGTTA	35	1.212702E-7	45.0	21
TTTACGA	35	1.212702E-7	45.0	34
GGCGTAC	25	3.8921284E-5	45.0	8
TAAGTCG	25	3.8921284E-5	45.0	1
CGTAGAA	20	7.0348807E-4	45.0	37
TACGAAG	50	2.1827873E-11	45.0	1
CGCTAAG	25	3.8921284E-5	45.0	34
ACGTGCG	40	6.8212103E-9	45.0	1
GTCGTGA	25	3.8921284E-5	45.0	34
AATCTAC	25	3.8921284E-5	45.0	13
AGCGAAC	20	7.0348807E-4	45.0	30