##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546298_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2502962 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.175428951777935 31.0 31.0 33.0 30.0 34.0 2 31.519446160189407 31.0 31.0 34.0 30.0 34.0 3 31.58182345556984 31.0 31.0 34.0 30.0 34.0 4 35.41752331837239 37.0 35.0 37.0 33.0 37.0 5 35.31478424362815 37.0 35.0 37.0 33.0 37.0 6 35.34256253191219 37.0 35.0 37.0 33.0 37.0 7 35.803918317577335 37.0 35.0 37.0 35.0 37.0 8 35.728776945075474 37.0 35.0 37.0 35.0 37.0 9 37.475737945681956 39.0 37.0 39.0 35.0 39.0 10 37.0261646001817 39.0 37.0 39.0 33.0 39.0 11 36.64378044892411 39.0 35.0 39.0 32.0 39.0 12 35.419337169321786 37.0 35.0 39.0 31.0 39.0 13 34.775658599691084 35.0 34.0 39.0 27.0 39.0 14 35.56931147975878 37.0 34.0 40.0 27.0 41.0 15 36.069718597405796 37.0 35.0 40.0 31.0 41.0 16 36.32608045987114 37.0 35.0 40.0 32.0 41.0 17 36.292246146765315 36.0 35.0 40.0 32.0 41.0 18 36.241714416759024 36.0 35.0 40.0 31.0 41.0 19 36.09528071141312 36.0 35.0 40.0 31.0 41.0 20 35.89071388219238 36.0 34.0 40.0 31.0 41.0 21 35.69637932977009 35.0 34.0 40.0 30.0 41.0 22 35.54943023505751 35.0 34.0 40.0 30.0 41.0 23 35.56782324302167 35.0 34.0 40.0 30.0 41.0 24 35.52631921699171 35.0 34.0 40.0 30.0 41.0 25 35.45384548387071 35.0 34.0 40.0 30.0 41.0 26 35.32333531232196 35.0 34.0 40.0 30.0 41.0 27 35.174665855893934 35.0 34.0 40.0 29.0 41.0 28 35.18988462469666 35.0 34.0 40.0 29.0 41.0 29 35.20469867301222 36.0 34.0 40.0 30.0 41.0 30 35.09784687102721 36.0 34.0 40.0 29.0 41.0 31 34.816872169853156 35.0 34.0 40.0 29.0 41.0 32 34.53190899422364 35.0 34.0 40.0 27.0 41.0 33 34.328402908234324 35.0 33.0 40.0 26.0 41.0 34 34.14293744771195 35.0 33.0 40.0 25.0 41.0 35 33.93515402950584 35.0 33.0 39.0 24.0 41.0 36 33.67552164195861 35.0 33.0 39.0 23.0 41.0 37 33.47082097131319 35.0 33.0 39.0 23.0 41.0 38 33.42915114172728 35.0 33.0 39.0 23.0 41.0 39 33.41879461214353 35.0 33.0 39.0 23.0 41.0 40 33.15982983361314 35.0 32.0 39.0 22.0 41.0 41 33.126411028213774 35.0 32.0 39.0 21.0 41.0 42 33.00466926785145 35.0 32.0 39.0 21.0 41.0 43 32.92173273106024 35.0 32.0 39.0 21.0 41.0 44 32.712177412202024 35.0 32.0 38.0 20.0 41.0 45 32.711565736914906 35.0 32.0 38.0 20.0 40.0 46 32.665469951201814 35.0 32.0 38.0 20.0 40.0 47 32.61846084758778 35.0 32.0 38.0 20.0 40.0 48 32.56301454037256 35.0 32.0 38.0 20.0 40.0 49 32.62051960836801 35.0 32.0 38.0 20.0 40.0 50 32.429817951690836 35.0 32.0 38.0 19.0 40.0 51 32.18708154578455 35.0 31.0 38.0 18.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 4.0 12 7.0 13 9.0 14 33.0 15 87.0 16 274.0 17 750.0 18 1700.0 19 3425.0 20 5935.0 21 9560.0 22 14478.0 23 20830.0 24 29526.0 25 41162.0 26 53313.0 27 60584.0 28 64832.0 29 71129.0 30 83049.0 31 99705.0 32 124180.0 33 162554.0 34 297769.0 35 433409.0 36 153908.0 37 178673.0 38 246820.0 39 345187.0 40 69.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.9381444864125 23.737555743954562 29.99162592160808 15.33267384802486 2 30.235576888502504 26.317618885144878 30.21811757429797 13.228686652054646 3 27.421191372461905 24.822750005793136 33.257596399785534 14.498462221959421 4 24.846082361617956 27.527465458924265 32.6315781062597 14.994874073198075 5 22.826275428871874 31.835041842425092 31.390928028471865 13.947754700231165 6 20.350448788275653 39.97891298389668 28.54250284263205 11.12813538519562 7 84.37838848532259 5.373273745266608 8.225054954889446 2.0232828145213553 8 86.52920020359878 3.8392512551129423 7.1566008593019 2.4749476819863827 9 82.51187992466525 4.795877843930511 9.681489371392773 3.0107528600114586 10 59.301299819973295 17.50997418258847 12.994444182532536 10.194281814905699 11 53.798299774427264 17.15611343680008 18.311784198082112 10.73380259069055 12 47.200676638318924 19.961070124116947 21.260570476099915 11.577682761464217 13 20.676902006502694 46.47973081493047 21.922865788613652 10.920501389953184 14 12.737268883826442 47.73052886939554 27.570574383470465 11.961627863307553 15 10.895530974900938 20.641623804116882 56.23173663843078 12.231108582551393 16 11.988675816892146 14.769620953094773 53.502650060208666 19.739053169804414 17 13.281144499996403 16.025253279913958 29.275194749261075 41.41840747082856 18 20.436986258680715 20.94734158968454 37.02117730912415 21.594494842510596 19 30.67501624075795 22.28707427439969 25.64070089757655 21.397208587265805 20 32.69594184809838 20.98022263222534 24.245194293800704 22.078641225875582 21 21.269559825518726 29.197966249587488 27.342604482209477 22.189869442684305 22 21.839045099366274 24.84736084686863 24.072478926967328 29.241115126797766 23 17.67154275614252 31.956178319926554 24.38454918612428 25.987729737806646 24 19.234211306444124 22.44648540409323 41.56047914430982 16.758824145152822 25 14.910054567348604 23.72549003940132 39.839637996901274 21.524817396348805 26 15.237546554841824 36.002264517000256 27.971459414885242 20.788729513272674 27 16.85127460984226 34.97340351151955 28.570269944170146 19.605051934468044 28 13.238195386106542 27.467176888822127 42.4493859675057 16.845241757565635 29 12.938949932120424 23.273305787303205 41.934356174804094 21.853388105772282 30 17.179965177257987 30.55519820117125 32.07671550746675 20.18812111410401 31 30.725196786846944 24.950918152173305 23.60543228383012 20.718452777149633 32 31.51985527546962 25.787367127427423 25.27573331117292 17.417044285930032 33 28.863043066574722 25.62400068398961 25.129586465955136 20.383369783480532 34 18.157526962055357 25.885930349721647 29.184502201791318 26.772040486431674 35 19.26865050288418 23.6227717400424 33.47565804035379 23.63291971671963 36 31.805277107682816 21.262847777952683 26.479107553370767 20.452767560993735 37 20.73842910919143 30.827155985588274 29.272358110111142 19.162056795109155 38 19.675888007888254 33.1193601820563 23.565479619746522 23.639272190308922 39 19.980966550830576 31.237030366421862 27.518236393520958 21.263766689226603 40 24.6331346620524 24.416391459398902 24.69518114937422 26.255292729174474 41 16.550950433925884 22.636859848451554 26.322892636803914 34.489297080818645 42 21.864215277738936 24.976328046530472 23.619855195564295 29.5396014801663 43 22.105489416139758 25.982136364834947 25.461353388505298 26.45102083052 44 19.55690897424731 30.217158710359964 28.285846928559046 21.94008538683368 45 16.3721622621518 37.214348439968326 22.44724450471082 23.966244793169054 46 21.98319431137988 32.686233350726056 25.683290437489664 19.6472819004044 47 22.902425206615202 25.27617279047784 27.229618348181074 24.59178365472588 48 23.391965199631475 21.26995935215956 31.473590090460824 23.864485357748137 49 20.245413234399884 20.847100355498803 34.10647065356965 24.801015756531662 50 18.69361180872902 32.91120680218078 26.32265292081941 22.072528468270793 51 17.181323567836827 35.199016205599605 23.343582523426246 24.27607770313732 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1266.0 1 1724.5 2 2183.0 3 9956.0 4 17729.0 5 13716.5 6 9704.0 7 10762.5 8 11821.0 9 13070.0 10 14319.0 11 14577.5 12 14836.0 13 14226.0 14 13616.0 15 12874.0 16 12132.0 17 11850.5 18 11569.0 19 10985.0 20 10401.0 21 10671.5 22 10942.0 23 10351.5 24 9761.0 25 10556.0 26 12044.5 27 12738.0 28 15123.5 29 17509.0 30 18511.5 31 19514.0 32 26533.5 33 33553.0 34 38316.5 35 43080.0 36 48896.0 37 54712.0 38 73136.0 39 91560.0 40 137184.5 41 182809.0 42 231392.0 43 279975.0 44 282459.0 45 284943.0 46 266449.0 47 247955.0 48 235296.0 49 222637.0 50 208827.5 51 195018.0 52 172972.0 53 150926.0 54 135682.5 55 120439.0 56 109653.5 57 98868.0 58 89332.5 59 79797.0 60 73557.5 61 67318.0 62 60877.0 63 54436.0 64 44613.5 65 34791.0 66 27975.5 67 21160.0 68 17450.5 69 13741.0 70 11356.0 71 8971.0 72 7302.0 73 5633.0 74 4994.5 75 3370.0 76 2384.0 77 1811.0 78 1238.0 79 881.0 80 524.0 81 542.0 82 560.0 83 336.5 84 113.0 85 73.5 86 34.0 87 26.0 88 18.0 89 14.5 90 11.0 91 7.5 92 4.0 93 4.0 94 4.0 95 3.0 96 2.0 97 1.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2502962.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 17.462000818103807 #Duplication Level Percentage of deduplicated Percentage of total 1 82.200641221356 14.353876642559756 2 8.035661291839254 2.8063744810420426 3 2.705149944851024 1.4171199165024615 4 1.2807622169716044 0.8945868352221841 5 0.7143213370889157 0.6236739886317826 6 0.46022721839317043 0.48218928384571086 7 0.3175645561200292 0.38817187771381056 8 0.21728355921839046 0.3035364551065633 9 0.19083684678064547 0.29991538571471843 >10 1.5726778769104437 6.135600304950943 >50 0.5755329767235475 7.484841864205782 >100 1.7035470814933376 60.71204179911048 >500 0.023030243083653174 2.5756765152152092 >1k 0.0023030243083653175 0.5617690952119734 >5k 0.0 0.0 >10k+ 4.606048616730635E-4 0.9606255549665981 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 13571 0.5421976042784509 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 10316 0.4121516826863532 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 2929 0.11702135310084612 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.09129183743101174 0.0 2 0.0 0.0 0.0 0.38402500717150323 0.0 3 0.0 0.0 0.0 0.5249780060584219 0.0 4 0.0 0.0 0.0 0.7741627719477963 0.0 5 0.0 0.0 0.0 1.2525959243488316 0.0 6 0.0 0.0 0.0 1.778013409712173 0.0 7 0.0 0.0 0.0 2.091282248791632 0.0 8 0.0 0.0 0.0 2.897966489303473 0.0 9 0.0 0.0 0.0 3.248111637332089 0.0 10 0.0 0.0 0.0 3.814600461373365 0.0 11 0.0 0.0 0.0 4.225513611473127 0.0 12 0.0 0.0 0.0 4.638024868136232 0.0 13 0.0 0.0 0.0 4.787048305168037 0.0 14 0.0 0.0 0.0 4.839865727086548 0.0 15 0.0 0.0 0.0 4.933594677026659 0.0 16 0.0 0.0 0.0 5.139071228408581 0.0 17 0.0 0.0 0.0 5.370836632757509 0.0 18 0.0 0.0 0.0 5.761693545487307 0.0 19 0.0 0.0 0.0 5.8942964375807545 0.0 20 0.0 0.0 0.0 6.035968584421178 0.0 21 0.0 0.0 0.0 6.214996472179761 0.0 22 0.0 0.0 0.0 6.3863934010983785 0.0 23 0.0 0.0 0.0 6.600339917266023 0.0 24 0.0 0.0 0.0 6.74093334217619 0.0 25 0.0 0.0 0.0 6.848525866553308 0.0 26 0.0 0.0 0.0 6.965627124982321 0.0 27 0.0 0.0 0.0 7.071501684803844 0.0 28 0.0 0.0 0.0 7.181371511033727 0.0 29 0.0 0.0 0.0 7.298273006142322 0.0 30 0.0 0.0 0.0 7.479258574441002 0.0 31 0.0 0.0 0.0 7.648298296178687 0.0 32 0.0 0.0 0.0 7.773310182096252 0.0 33 0.0 0.0 0.0 7.897203393419477 0.0 34 0.0 0.0 0.0 8.03076514945093 0.0 35 0.0 0.0 0.0 8.231247617822405 0.0 36 0.0 0.0 0.0 8.37172118474032 0.0 37 0.0 0.0 0.0 8.510996171735728 0.0 38 0.0 0.0 0.0 8.637606164216637 0.0 39 0.0 0.0 0.0 8.766813079862978 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AGGTACG 75 0.0 45.000004 1 TACCCGT 30 2.166531E-6 45.000004 41 GTCGATA 30 2.166531E-6 45.000004 10 ACTTGCA 30 2.166531E-6 45.000004 27 ATCGGAT 30 2.166531E-6 45.000004 39 TAGTACG 115 0.0 45.000004 1 GTGCCGA 30 2.166531E-6 45.000004 42 ATTTACG 85 0.0 45.0 1 ACCGGGT 35 1.212702E-7 45.0 29 CGAGTTA 35 1.212702E-7 45.0 21 TTTACGA 35 1.212702E-7 45.0 34 GGCGTAC 25 3.8921284E-5 45.0 8 TAAGTCG 25 3.8921284E-5 45.0 1 CGTAGAA 20 7.0348807E-4 45.0 37 TACGAAG 50 2.1827873E-11 45.0 1 CGCTAAG 25 3.8921284E-5 45.0 34 ACGTGCG 40 6.8212103E-9 45.0 1 GTCGTGA 25 3.8921284E-5 45.0 34 AATCTAC 25 3.8921284E-5 45.0 13 AGCGAAC 20 7.0348807E-4 45.0 30 >>END_MODULE