SRR1546297_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546297_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1891853
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	7948	0.42011720783802964	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3543	0.1872767070168771	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGTTGT	30	2.166249E-6	45.000004	15
ATTCGTT	35	1.2124838E-7	45.000004	22
GTTAGTC	25	3.8917642E-5	45.000004	20
CGTTCGA	25	3.8917642E-5	45.000004	43
TCTAGCG	70	0.0	45.000004	1
CGTAAGT	30	2.166249E-6	45.000004	16
CAGTCGA	35	1.2124838E-7	45.000004	42
GCTAACG	60	0.0	45.000004	1
CGCCCAT	25	3.8917642E-5	45.000004	36
ATTTCGC	35	1.2124838E-7	45.000004	16
CGAACTA	55	1.8189894E-12	45.0	40
ACGCATC	20	7.0344453E-4	45.0	19
TCGATTG	20	7.0344453E-4	45.0	1
ACTCGAT	20	7.0344453E-4	45.0	27
TCGTACT	40	6.8193913E-9	45.0	12
ATACCCG	20	7.0344453E-4	45.0	36
GTCGGTA	20	7.0344453E-4	45.0	1
TGCGTAG	160	0.0	45.0	1
TCACGAC	500	0.0	44.55	25
CGACGGT	475	0.0	44.526314	28