SRR1546296_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546296_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2042194
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	6100	0.29869836068463623	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5805	0.2842531120941497	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	2981	0.14597046118047552	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2707	0.13255351842185414	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2440	0.11947934427385448	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCCGATT	20	7.034576E-4	45.0	35
CGCTATA	20	7.034576E-4	45.0	13
TACGAGT	20	7.034576E-4	45.0	21
CTATTCG	20	7.034576E-4	45.0	32
ATACGCG	55	1.8189894E-12	45.0	1
CAATACG	25	3.891874E-5	45.0	29
GTACGAC	20	7.034576E-4	45.0	35
CGTAAGG	405	0.0	41.666668	2
CGTTTTT	5495	0.0	41.396725	1
TCACGAC	345	0.0	40.434784	25
TGCGTAG	190	0.0	40.263157	1
AATCCCG	45	1.929584E-8	40.0	33
GCTACGA	390	0.0	39.807693	10
TGGGCGA	835	0.0	39.61078	6
CGGGATA	365	0.0	39.452057	6
TAGGGTA	925	0.0	39.405403	5
CAACGAC	40	3.4599907E-7	39.375	12
ATAGCGC	40	3.4599907E-7	39.375	11
CGTTCCA	40	3.4599907E-7	39.375	29
TACGCGG	160	0.0	39.375	2