SRR1546295_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546295_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1915622
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	5164	0.26957301597079175	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5085	0.2654490290882021	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	2906	0.15170007444057335	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2157	0.11260050260437603	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2079	0.10852871808738884	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGAATA	30	2.1662636E-6	45.000004	34
TCCGCGA	40	6.8193913E-9	45.000004	22
GTCGATC	30	2.1662636E-6	45.000004	36
ACGTTAC	50	2.1827873E-11	45.000004	1
TAGCGAT	20	7.034464E-4	45.000004	25
CTACGTC	25	3.8917824E-5	45.000004	1
CGCTATA	20	7.034464E-4	45.000004	27
ACGTGCC	25	3.8917824E-5	45.000004	45
ATGCGAT	40	6.8193913E-9	45.000004	12
TACGTCG	25	3.8917824E-5	45.000004	2
TACGTAG	65	0.0	45.000004	1
CGGTCTA	340	0.0	43.67647	31
GCGATAT	270	0.0	43.333332	9
TGCGTAG	125	0.0	43.2	1
ACGGGTA	140	0.0	41.785713	5
GTATGCG	65	0.0	41.538464	1
TAATGCG	65	0.0	41.538464	1
GCGTAAG	185	0.0	41.351353	1
ACGTTAG	120	0.0	41.250004	1
TGCGCGT	55	6.184564E-11	40.909092	37