SRR1546294_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546294_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1719121
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	7912	0.46023520159430314	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3337	0.19411082756827472	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1927	0.112092168032384	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1855	0.10790398116246618	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGAATC	30	2.1661326E-6	45.000004	30
TCGATAT	30	2.1661326E-6	45.000004	15
AAGTACG	40	6.8175723E-9	45.0	1
GATACGT	35	1.2123928E-7	45.0	9
CGTGCTA	20	7.0342637E-4	45.0	34
TCCGATT	25	3.8916165E-5	45.0	27
TTAGCCG	45	3.8562575E-10	45.0	1
CGGTTGA	20	7.0342637E-4	45.0	42
TATATCG	40	6.8175723E-9	45.0	1
ATTCGAA	20	7.0342637E-4	45.0	14
CGCGACA	25	3.8916165E-5	45.0	39
TAGCCGA	25	3.8916165E-5	45.0	13
CCGTCGA	25	3.8916165E-5	45.0	40
ATCGTGT	20	7.0342637E-4	45.0	10
ATGTACG	20	7.0342637E-4	45.0	1
TAGCAAC	35	1.2123928E-7	45.0	1
CGTAGTC	25	3.8916165E-5	45.0	33
CACTACG	20	7.0342637E-4	45.0	1
CGCTAAG	25	3.8916165E-5	45.0	41
TATTCGA	20	7.0342637E-4	45.0	45