##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546294_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1719121 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.24158857927976 31.0 31.0 33.0 30.0 34.0 2 31.4823302141036 31.0 31.0 34.0 30.0 34.0 3 31.57711353651081 31.0 31.0 34.0 30.0 34.0 4 35.34953560569617 37.0 35.0 37.0 33.0 37.0 5 35.08724458604136 37.0 35.0 37.0 32.0 37.0 6 35.22626621395469 37.0 35.0 37.0 32.0 37.0 7 35.706135286579595 37.0 35.0 37.0 35.0 37.0 8 35.76375484913511 37.0 35.0 37.0 35.0 37.0 9 37.55626567298055 39.0 37.0 39.0 35.0 39.0 10 36.88533558719834 39.0 37.0 39.0 32.0 39.0 11 36.53793304834273 39.0 35.0 39.0 32.0 39.0 12 35.37878078390061 37.0 35.0 39.0 31.0 39.0 13 34.761580482118475 37.0 34.0 39.0 27.0 39.0 14 35.628008150677005 37.0 34.0 40.0 27.0 41.0 15 35.984277430151806 37.0 34.0 40.0 30.0 41.0 16 36.19445402621456 37.0 35.0 40.0 31.0 41.0 17 36.15861478046048 37.0 34.0 40.0 31.0 41.0 18 36.15958446205939 36.0 35.0 40.0 31.0 41.0 19 36.07549963033434 36.0 35.0 40.0 31.0 41.0 20 35.97780319128206 36.0 34.0 40.0 31.0 41.0 21 35.833597518731956 36.0 34.0 40.0 30.0 41.0 22 35.71215522351248 36.0 34.0 40.0 30.0 41.0 23 35.723807690092784 36.0 34.0 40.0 30.0 41.0 24 35.602862160371494 35.0 34.0 40.0 30.0 41.0 25 35.45830514547841 35.0 34.0 40.0 30.0 41.0 26 35.4177687318112 35.0 34.0 40.0 30.0 41.0 27 35.32402605750264 35.0 34.0 40.0 29.0 41.0 28 35.33258799118852 36.0 34.0 40.0 29.0 41.0 29 35.40875656803681 36.0 34.0 40.0 30.0 41.0 30 35.34299156371192 36.0 34.0 40.0 29.0 41.0 31 35.19697740880368 35.0 34.0 40.0 29.0 41.0 32 35.018529818436285 35.0 34.0 40.0 29.0 41.0 33 34.868140171634224 35.0 34.0 40.0 28.0 41.0 34 34.777306542122396 35.0 34.0 40.0 27.0 41.0 35 34.635037324307014 35.0 33.0 40.0 27.0 41.0 36 34.432507077744965 35.0 33.0 40.0 25.0 41.0 37 34.334090503228104 35.0 33.0 40.0 25.0 41.0 38 34.378594642261945 35.0 33.0 40.0 26.0 41.0 39 34.367184159811906 35.0 33.0 40.0 26.0 41.0 40 34.15158793360095 35.0 33.0 40.0 24.0 41.0 41 34.123787098174006 35.0 33.0 40.0 24.0 41.0 42 34.09706239409559 35.0 33.0 39.0 24.0 41.0 43 34.070351068947446 35.0 33.0 39.0 25.0 41.0 44 33.84028349371568 35.0 33.0 39.0 23.0 41.0 45 33.84910311723259 35.0 33.0 39.0 24.0 41.0 46 33.814821644317064 35.0 33.0 39.0 24.0 41.0 47 33.788074835919055 35.0 33.0 39.0 24.0 41.0 48 33.705060900308936 35.0 33.0 39.0 23.0 41.0 49 33.68816621982978 35.0 33.0 39.0 24.0 41.0 50 33.597854950291456 35.0 33.0 39.0 24.0 40.0 51 33.50872102661767 35.0 33.0 38.0 24.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 1.0 11 1.0 12 4.0 13 3.0 14 14.0 15 55.0 16 178.0 17 478.0 18 1029.0 19 1937.0 20 3378.0 21 5373.0 22 8214.0 23 11720.0 24 16394.0 25 22296.0 26 28356.0 27 34199.0 28 38771.0 29 44959.0 30 53907.0 31 66682.0 32 83598.0 33 109343.0 34 195923.0 35 282832.0 36 111992.0 37 134329.0 38 186595.0 39 276424.0 40 135.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.20708664486095 23.991970315062176 29.990908144336554 12.810034895740325 2 29.080501023488164 27.477297991240874 30.728436218276666 12.713764766994295 3 29.116914981551616 26.699284110891554 30.7172095506948 13.466591356862024 4 26.20368199795128 28.327499925834193 30.455680548373266 15.013137527841264 5 22.313787103990933 33.4277226559387 29.738162700589427 14.520327539480931 6 22.036843247217618 40.798466192897415 26.78357137164865 10.381119188236314 7 87.03389697409317 5.378562649167802 5.5306752695127335 2.0568651072263093 8 89.24304920945065 4.041425821684454 4.9617798863488956 1.7537450825160068 9 86.18433490138274 5.154843667199692 6.119115524736188 2.5417059066813796 10 57.087779161559894 21.11241733420742 11.536767918023221 10.263035586209464 11 53.824483558748916 18.97207933589317 15.490125476915237 11.713311628442675 12 48.30148663183104 20.536599808855804 18.81368443524336 12.348229124069801 13 23.746961383171982 42.724799476011285 19.217030098521278 14.311209042295452 14 15.888584922178254 46.25357959096538 23.916873797714064 13.9409616891423 15 14.938913549424388 23.654181410150883 49.01167515259252 12.395229887832212 16 15.572144136451127 17.052086502346256 48.68208811363482 18.6936812475678 17 15.371809197840058 17.75831951328615 28.69024344417874 38.179627844695055 18 21.93685028569833 23.648015468370172 32.736671822402265 21.678462423529236 19 31.43676332265152 24.412301402868096 23.623584378295654 20.527350896184736 20 34.910864331248355 22.653262917502605 22.34327891986661 20.092593831382434 21 24.077479130322995 28.338959270464382 25.021857100227386 22.56170449898524 22 22.847431914332965 26.63872990906399 23.5558171879699 26.958020988633148 23 21.76589082443877 31.22566707055524 22.14352567387636 24.86491643112963 24 21.701846466886273 24.0924867999402 36.827134332022005 17.37853240115152 25 18.812579219263796 24.101328527776694 35.21171575473745 21.874376498222055 26 17.83923295684248 35.43665629120928 26.03464212234043 20.689468629607806 27 19.063230569575964 35.00736713704271 27.05464013295166 18.87476216042966 28 15.43975089595206 30.731693696953265 36.83649958321723 16.992055823877436 29 16.76426499356357 25.445445666709904 36.86069799624343 20.929591343483096 30 19.406196538812566 30.52792677187935 30.69295296840653 19.372923720901554 31 30.17216356498466 27.42418945495983 22.63069324381472 19.77295373624079 32 32.34647241235492 27.376432490790354 24.194922870466943 16.082172226387787 33 29.844961465772336 28.536385745971344 23.075862606529732 18.54279018172659 34 21.04598803690956 28.026415825296763 26.98530237254969 23.94229376524398 35 20.873283497787533 25.771019026583936 29.6046642441108 23.751033231517734 36 30.69493072331732 25.350397092467603 24.786213419532423 19.16845876468265 37 22.334146345719702 33.11756415051646 27.25392802484525 17.29436147891859 38 21.027024857470767 34.49460509178819 21.245683113637725 23.232686937103324 39 22.070988604059867 32.45356202384823 24.405728276252805 21.069721095839096 40 24.54649789049171 26.332236067152927 23.874526574918228 25.24673946743714 41 16.850297332183136 25.83832086281303 26.02801082646306 31.283370978540777 42 22.477533576752307 26.814808265386787 21.942550873382384 28.765107284478518 43 23.16177860662513 27.308025438581694 23.341870642031594 26.188325312761577 44 20.569756288242655 31.636691076428015 25.755953187704645 22.037599447624686 45 18.007051277949603 37.7541778618259 21.19327260850167 23.04549825172283 46 21.61674483646003 34.110048100162814 23.87510826753905 20.398098795838106 47 23.109833455585733 28.694373461786576 24.709546332108097 23.486246750519594 48 24.449413392076533 23.486246750519594 29.03256955153244 23.03177030587143 49 21.353063571441453 23.67576220638338 30.259650135156278 24.711524087018887 50 18.81921051514117 33.693963368488895 25.356330357199987 22.13049575916995 51 18.260262075793385 35.29530498434956 21.71016467136403 24.734268268493025 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 975.0 1 1537.5 2 2100.0 3 4599.0 4 7098.0 5 5750.0 6 4402.0 7 4809.0 8 5216.0 9 5724.0 10 6232.0 11 6289.5 12 6347.0 13 6355.5 14 6364.0 15 5978.0 16 5592.0 17 5467.5 18 5343.0 19 5077.0 20 4811.0 21 4791.0 22 4771.0 23 5531.0 24 6291.0 25 6457.0 26 8277.5 27 9932.0 28 13082.5 29 16233.0 30 21065.0 31 25897.0 32 26345.5 33 26794.0 34 31855.0 35 36916.0 36 38384.5 37 39853.0 38 52291.0 39 64729.0 40 92741.5 41 120754.0 42 149334.0 43 177914.0 44 180636.5 45 183359.0 46 169555.0 47 155751.0 48 144929.5 49 134108.0 50 126434.0 51 118760.0 52 112213.5 53 105667.0 54 94904.0 55 84141.0 56 80685.0 57 77229.0 58 75952.5 59 74676.0 60 71197.0 61 67718.0 62 58381.5 63 49045.0 64 39542.5 65 30040.0 66 23007.5 67 15975.0 68 13668.0 69 11361.0 70 9619.0 71 7877.0 72 6754.0 73 5631.0 74 4434.0 75 2499.5 76 1762.0 77 1252.5 78 743.0 79 548.5 80 354.0 81 345.5 82 337.0 83 213.0 84 89.0 85 68.0 86 47.0 87 30.5 88 14.0 89 13.5 90 13.0 91 6.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1719121.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 16.273160243785963 #Duplication Level Percentage of deduplicated Percentage of total 1 81.66692547432073 13.289789648609474 2 7.449125580364428 2.424416284907109 3 2.3481233525440435 1.146341627643754 4 1.0309274053000173 0.6710578746463063 5 0.6040077848245993 0.4914557735472447 6 0.4025448189005537 0.3930405805964707 7 0.28221168707908273 0.3214733204554966 8 0.1978804954524556 0.2576112809294055 9 0.17201727993135332 0.25193382849207896 >10 2.503146311171514 10.271930091260641 >50 1.3929540907413092 16.533555413576632 >100 1.9407165239949307 52.164216410010155 >500 0.0076078116490374366 0.8362017668454023 >1k 0.0014491069807690356 0.48053303733480496 >5k 3.622767451922589E-4 0.46644306114501005 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 7912 0.46023520159430314 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3337 0.19411082756827472 No Hit AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 1927 0.112092168032384 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 1855 0.10790398116246618 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.035832265442630275 0.0 2 0.0 0.0 0.0 0.11343006106027441 0.0 3 0.0 0.0 0.0 0.16252491825764445 0.0 4 0.0 0.0 0.0 0.2532107978437818 0.0 5 0.0 0.0 0.0 0.40130973910504264 0.0 6 0.0 0.0 0.0 0.5509210811804405 0.0 7 0.0 0.0 0.0 0.6303802931847148 0.0 8 0.0 0.0 0.0 0.8285047998366607 0.0 9 0.0 0.0 0.0 0.8990641147423596 0.0 10 0.0 0.0 0.0 1.0263384601781957 0.0 11 0.0 0.0 0.0 1.1856058997592374 0.0 12 0.0 0.0 0.0 1.3271898836672928 0.0 13 0.0 0.0 0.0 1.3807056047829094 0.0 14 0.0 0.0 0.0 1.4047295100228547 0.0 15 0.0 0.0 0.0 1.4431212229971013 0.0 16 0.0 0.0 0.0 1.5321783632449373 0.0 17 0.0 0.0 0.0 1.6338000641025268 0.0 18 0.0 0.0 0.0 1.7763729254659795 0.0 19 0.0 0.0 0.0 1.8418715145705276 0.0 20 0.0 0.0 0.0 1.9012041618943634 0.0 21 0.0 0.0 0.0 1.984095360361487 0.0 22 0.0 0.0 0.0 2.0769335026446654 0.0 23 0.0 0.0 0.0 2.1762866022810496 0.0 24 5.8169262082192006E-5 0.0 0.0 2.252779181919132 0.0 25 5.8169262082192006E-5 0.0 0.0 2.315776492754146 0.0 26 5.8169262082192006E-5 0.0 0.0 2.3746437859813243 0.0 27 5.8169262082192006E-5 0.0 0.0 2.4350234800226396 0.0 28 5.8169262082192006E-5 0.0 0.0 2.5022089777275713 0.0 29 1.1633852416438401E-4 0.0 0.0 2.5716630766537083 0.0 30 1.1633852416438401E-4 0.0 0.0 2.664733895985216 0.0 31 1.1633852416438401E-4 0.0 0.0 2.7625164255453805 0.0 32 1.1633852416438401E-4 0.0 0.0 2.843022684267134 0.0 33 1.1633852416438401E-4 0.0 0.0 2.9238197892992988 0.0 34 1.1633852416438401E-4 0.0 0.0 3.006478310718094 0.0 35 1.1633852416438401E-4 0.0 0.0 3.12235148078582 0.0 36 1.1633852416438401E-4 0.0 0.0 3.222577119353437 0.0 37 1.1633852416438401E-4 0.0 0.0 3.325304036190588 0.0 38 1.1633852416438401E-4 0.0 0.0 3.4216323341986983 0.0 39 1.1633852416438401E-4 0.0 0.0 3.515168507626863 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCGAATC 30 2.1661326E-6 45.000004 30 TCGATAT 30 2.1661326E-6 45.000004 15 AAGTACG 40 6.8175723E-9 45.0 1 GATACGT 35 1.2123928E-7 45.0 9 CGTGCTA 20 7.0342637E-4 45.0 34 TCCGATT 25 3.8916165E-5 45.0 27 TTAGCCG 45 3.8562575E-10 45.0 1 CGGTTGA 20 7.0342637E-4 45.0 42 TATATCG 40 6.8175723E-9 45.0 1 ATTCGAA 20 7.0342637E-4 45.0 14 CGCGACA 25 3.8916165E-5 45.0 39 TAGCCGA 25 3.8916165E-5 45.0 13 CCGTCGA 25 3.8916165E-5 45.0 40 ATCGTGT 20 7.0342637E-4 45.0 10 ATGTACG 20 7.0342637E-4 45.0 1 TAGCAAC 35 1.2123928E-7 45.0 1 CGTAGTC 25 3.8916165E-5 45.0 33 CACTACG 20 7.0342637E-4 45.0 1 CGCTAAG 25 3.8916165E-5 45.0 41 TATTCGA 20 7.0342637E-4 45.0 45 >>END_MODULE