SRR1546293_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546293_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2477892
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	6421	0.25913155214190126	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4897	0.1976276609311463	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	2526	0.10194148897530644	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	65	0.0	45.000004	10
CGTCTAG	30	2.1665219E-6	45.000004	12
CGATTAC	30	2.1665219E-6	45.000004	10
CCGTATT	25	3.892115E-5	45.000004	18
CGAGGTT	20	7.034866E-4	45.000004	11
CGGTGAA	20	7.034866E-4	45.000004	42
ACTCGCG	25	3.892115E-5	45.000004	37
CACCGTA	20	7.034866E-4	45.000004	18
CCGTTCG	20	7.034866E-4	45.000004	38
ATCGAAT	20	7.034866E-4	45.000004	38
GTACGAC	20	7.034866E-4	45.000004	38
TAATCCG	25	3.892115E-5	45.000004	1
GCTCGAT	45	3.8562575E-10	45.0	8
ACGACCG	45	3.8562575E-10	45.0	1
CTATGCG	90	0.0	42.5	1
CGTTTTT	5960	0.0	41.79111	1
CTCACGT	140	0.0	41.785713	45
TATTGCG	130	0.0	41.538464	1
TCGGTGT	55	6.184564E-11	40.909092	32
TATCCGT	55	6.184564E-11	40.909092	42