SRR1546292_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546292_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1582554
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	4482	0.28321308467199224	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4147	0.2620447706681731	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2224	0.14053232938654858	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2006	0.12675712803480954	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1943	0.12277622122215102	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTATCGG	20	7.0340926E-4	45.000004	41
GCACGAT	20	7.0340926E-4	45.000004	40
TATGCGA	20	7.0340926E-4	45.000004	41
TACGACT	35	1.21232E-7	45.000004	13
CGTAAAC	20	7.0340926E-4	45.000004	40
ACGTATG	20	7.0340926E-4	45.000004	11
ACGTAAG	30	2.1660217E-6	45.000004	1
ACGTAAC	20	7.0340926E-4	45.000004	19
ATACGCG	30	2.1660217E-6	45.000004	1
ATCGCAC	20	7.0340926E-4	45.000004	27
TACACGA	25	3.8914754E-5	45.0	45
CCGCACA	25	3.8914754E-5	45.0	42
CGGACGT	25	3.8914754E-5	45.0	36
CGACGGT	185	0.0	43.783783	28
CGGTCTA	185	0.0	43.783783	31
TTACGAG	100	0.0	42.75	1
GCTACGA	245	0.0	41.32653	10
ATACCGG	60	3.6379788E-12	41.250004	2
CGCACGG	55	6.184564E-11	40.909092	2
CGTTTTT	3670	0.0	40.52452	1