##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546291_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1446920 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.203887568075636 31.0 31.0 33.0 30.0 34.0 2 31.421916899344815 31.0 31.0 34.0 30.0 34.0 3 31.49546968733586 31.0 31.0 34.0 30.0 34.0 4 35.28298523760816 37.0 35.0 37.0 33.0 37.0 5 34.995781383905125 37.0 35.0 37.0 32.0 37.0 6 35.13826334558925 37.0 35.0 37.0 32.0 37.0 7 35.68538136178918 37.0 35.0 37.0 35.0 37.0 8 35.76109252757582 37.0 35.0 37.0 35.0 37.0 9 37.480303679539986 39.0 37.0 39.0 35.0 39.0 10 36.82508086141598 39.0 37.0 39.0 32.0 39.0 11 36.47214358775883 39.0 35.0 39.0 32.0 39.0 12 35.33395419235341 37.0 35.0 39.0 30.0 39.0 13 34.73898556934731 37.0 33.0 39.0 27.0 39.0 14 35.622408287949575 37.0 34.0 40.0 27.0 41.0 15 35.99059588643463 37.0 34.0 40.0 30.0 41.0 16 36.194703231692145 37.0 34.0 40.0 31.0 41.0 17 36.179759765571006 37.0 34.0 40.0 31.0 41.0 18 36.154131534569984 37.0 35.0 40.0 31.0 41.0 19 36.05784770408869 37.0 35.0 40.0 30.0 41.0 20 35.95853537168606 36.0 34.0 40.0 30.0 41.0 21 35.78716722417273 36.0 34.0 40.0 30.0 41.0 22 35.64796533325961 36.0 34.0 40.0 30.0 41.0 23 35.65479363060847 36.0 34.0 40.0 30.0 41.0 24 35.5463971746883 35.0 34.0 40.0 30.0 41.0 25 35.39914853620103 35.0 34.0 40.0 29.0 41.0 26 35.31675628231001 35.0 34.0 40.0 29.0 41.0 27 35.235619799297815 35.0 34.0 40.0 29.0 41.0 28 35.25754568324441 36.0 34.0 40.0 29.0 41.0 29 35.32702429989219 36.0 34.0 40.0 29.0 41.0 30 35.24166989190833 36.0 34.0 40.0 29.0 41.0 31 35.10172089680148 36.0 34.0 40.0 29.0 41.0 32 34.91627180493738 35.0 34.0 40.0 28.0 41.0 33 34.747165703701654 35.0 33.0 40.0 27.0 41.0 34 34.62209797362674 35.0 34.0 40.0 27.0 41.0 35 34.4704510270091 35.0 33.0 40.0 26.0 41.0 36 34.26679222071711 35.0 33.0 40.0 24.0 41.0 37 34.159977054709316 35.0 33.0 40.0 24.0 41.0 38 34.16460412462334 35.0 33.0 40.0 24.0 41.0 39 34.148528598678574 35.0 33.0 40.0 24.0 41.0 40 33.93597641887596 35.0 33.0 40.0 23.0 41.0 41 33.92278425897769 35.0 33.0 40.0 23.0 41.0 42 33.88527216432146 35.0 33.0 39.0 23.0 41.0 43 33.816334697149806 35.0 33.0 39.0 23.0 41.0 44 33.59470530506179 35.0 33.0 39.0 23.0 41.0 45 33.57746039863987 35.0 33.0 39.0 23.0 41.0 46 33.533708152489424 35.0 33.0 39.0 23.0 41.0 47 33.52174757415752 35.0 33.0 39.0 23.0 41.0 48 33.459500179692036 35.0 33.0 39.0 23.0 41.0 49 33.39621471815995 35.0 32.0 39.0 24.0 40.0 50 33.290238575733284 35.0 32.0 39.0 24.0 40.0 51 33.19978644292704 35.0 32.0 38.0 23.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 0.0 12 3.0 13 6.0 14 18.0 15 62.0 16 175.0 17 508.0 18 1080.0 19 2007.0 20 3326.0 21 5351.0 22 7886.0 23 11327.0 24 15022.0 25 20237.0 26 25711.0 27 30279.0 28 34102.0 29 39549.0 30 47337.0 31 57477.0 32 71101.0 33 92401.0 34 159385.0 35 227282.0 36 95793.0 37 116174.0 38 158198.0 39 225006.0 40 116.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.62805130898737 23.975478948386918 29.204240732037707 13.192229010588008 2 30.020733696403397 27.326320736460897 29.681392198601163 12.971553368534542 3 29.36720758576839 26.243192436347552 30.710129101816268 13.679470876067784 4 26.76284798053797 28.065753462527297 29.7972244491748 15.37417410775993 5 23.68354850302712 32.9798468470959 29.236654410748347 14.099950239128631 6 22.072678517126032 41.26731263649683 26.032952754817128 10.627056091560002 7 85.69962402897188 6.007035634312885 6.298482293423271 1.9948580432919583 8 87.20530506178642 4.87974456086031 5.878210267326459 2.0367401100268157 9 83.008943134382 6.60734525751251 7.384098637105023 2.99961297100047 10 56.057833190501206 21.298205844137893 12.093412213529428 10.550548751831476 11 51.73672352306969 19.262778868216625 16.65959417244906 12.340903436264618 12 44.73896276228126 21.515011196196056 21.352528128714788 12.393497912807895 13 22.78142537251541 43.135418682442705 20.742611892848256 13.340544052193625 14 15.235189229535843 44.807245735769776 26.222113178337437 13.735451856356951 15 14.844359052331848 22.454731429519253 49.25089154894535 13.45001796920355 16 15.66969839382965 17.69040444530451 47.115251707074336 19.524645453791504 17 16.04843391479833 18.621278301495593 27.53393414978022 37.796353633925854 18 21.887181046636993 23.399427749979264 33.481118513808646 21.232272689575098 19 31.826707765460426 24.146393719072236 24.354421806319632 19.672476709147706 20 33.36162331020374 24.141210294971387 22.47871340502585 20.01845298979902 21 23.37281950626158 28.41090039532248 26.48266662980676 21.733613468609185 22 22.462126447903135 26.452671882343182 23.65694025930943 27.428261410444254 23 20.299187239100988 31.298620518065963 23.074738064302103 25.32745417853095 24 21.522820888508004 24.7752467309872 36.98048268045227 16.721449700052528 25 17.85274928814309 25.394216680949878 35.04851684958395 21.704517181323084 26 17.345741298758742 35.27271722002598 26.35439416139109 21.027147319824177 27 19.547106958228515 34.49969590578608 27.411121554750785 18.542075581234624 28 15.556630636109805 29.428924888729163 37.272067564205344 17.742376910955684 29 16.08990130760512 25.9138722251403 36.97025405689327 21.02597241036132 30 19.673858955574598 31.147955657534627 30.40264838415393 18.775537002736847 31 30.556907085395185 26.68558040527465 23.154424570812484 19.603087938517678 32 32.584593481325854 26.77141790838471 24.568047991595943 16.0759406186935 33 29.680286401459654 28.21469051502502 22.86166477759655 19.24335830591878 34 19.924667569734332 28.418433638349043 26.923465015342934 24.733433776573687 35 22.214427888203907 25.315359522295633 29.46776601332485 23.0024465761756 36 31.712534210599063 25.04685815387167 24.985209963232244 18.255397672297015 37 20.91981588477594 34.210322616316034 26.86527244077074 18.004589058137284 38 21.597462195560226 34.75942000939928 21.7605672739336 21.882550521106904 39 22.22458739944157 32.726135515439694 24.574475437480995 20.47480164763774 40 24.343640284189867 26.63464462444365 23.493074945401265 25.52864014596522 41 17.743275371133166 25.25640671218865 25.635556907085395 31.36476100959279 42 22.373593564260634 27.090233046747574 22.62260525806541 27.91356813092638 43 23.83158709534736 25.97662621292124 24.433900975865978 25.757885715865424 44 20.74744975534238 30.629129461200343 26.88890885467061 21.734511928786667 45 18.167555911867968 38.04971940397534 21.24243220081276 22.54029248334393 46 22.186782959666047 33.491554474331686 24.87304066568988 19.44862190031239 47 23.44006579492992 28.293824122964644 24.964683603792885 23.301426478312553 48 23.991513006938877 23.925372515412047 29.26644182124789 22.81667265640118 49 21.47506427445885 23.62127830149559 31.404085920437897 23.499571503607662 50 19.69901584054405 34.320971442788824 24.911674453321538 21.06833826334559 51 19.90158405440522 34.68968567716252 22.264741658142814 23.143988610289444 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1268.0 1 1748.0 2 2228.0 3 4713.5 4 7199.0 5 5771.0 6 4343.0 7 4712.5 8 5082.0 9 5680.0 10 6278.0 11 6316.0 12 6354.0 13 6253.5 14 6153.0 15 6112.0 16 6071.0 17 5607.0 18 5143.0 19 5709.0 20 6275.0 21 5788.0 22 5301.0 23 5266.5 24 5232.0 25 7102.0 26 9596.5 27 10221.0 28 14168.5 29 18116.0 30 19350.5 31 20585.0 32 22936.5 33 25288.0 34 27414.5 35 29541.0 36 31823.5 37 34106.0 38 40076.5 39 46047.0 40 75079.5 41 104112.0 42 122639.5 43 141167.0 44 148813.0 45 156459.0 46 145413.0 47 134367.0 48 123891.5 49 113416.0 50 106325.0 51 99234.0 52 89842.5 53 80451.0 54 72729.0 55 65007.0 56 65431.0 57 65855.0 58 62370.0 59 58885.0 60 55285.5 61 51686.0 62 46162.5 63 40639.0 64 33468.0 65 26297.0 66 21093.5 67 15890.0 68 14037.0 69 12184.0 70 10280.0 71 8376.0 72 7227.5 73 6079.0 74 4842.0 75 2769.5 76 1934.0 77 1333.0 78 732.0 79 520.0 80 308.0 81 274.5 82 241.0 83 188.0 84 135.0 85 88.5 86 42.0 87 25.0 88 8.0 89 5.0 90 2.0 91 2.5 92 3.0 93 2.0 94 1.0 95 1.0 96 1.0 97 0.5 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1446920.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 18.120911291076975 #Duplication Level Percentage of deduplicated Percentage of total 1 81.14665688066115 14.704513709019217 2 7.440138467091667 2.6964417831099503 3 2.4119878612791332 1.3112225420818096 4 1.1158121806405514 0.8087813417156235 5 0.6545046971411671 0.5930110778244146 6 0.40945972334322617 0.44518699943829115 7 0.3043018248691099 0.38599584619161864 8 0.2323502744531511 0.33683189694583515 9 0.20781619246047414 0.3389236909583068 >10 2.895086622027363 13.457891106716623 >50 1.656668093914732 21.98483402741258 >100 1.5151650536683188 40.713880320483824 >500 0.0069591658499693135 0.7953812589109139 >1k 0.0027063422749880658 0.9216278041903525 >5k 3.8662032499829516E-4 0.505476595000638 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 7215 0.49864539850164485 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3565 0.24638542559367485 No Hit AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 2930 0.2024991015398225 No Hit AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 1525 0.10539629005059022 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.04049982030796451 0.0 2 0.0 0.0 0.0 0.12391839217095624 0.0 3 0.0 0.0 0.0 0.17706576728499157 0.0 4 0.0 0.0 0.0 0.2846736516186106 0.0 5 6.911232134464932E-5 0.0 0.0 0.4469493821358472 0.0 6 6.911232134464932E-5 0.0 0.0 0.6127498410416609 0.0 7 6.911232134464932E-5 0.0 0.0 0.7060514748569375 0.0 8 6.911232134464932E-5 0.0 0.0 0.9224421529870346 0.0 9 6.911232134464932E-5 0.0 0.0 0.9998479528930417 0.0 10 1.3822464268929864E-4 0.0 0.0 1.1447764907527713 0.0 11 1.3822464268929864E-4 0.0 0.0 1.3038039421668095 0.0 12 1.3822464268929864E-4 0.0 0.0 1.4417521355707295 0.0 13 1.3822464268929864E-4 0.0 0.0 1.4980786774666188 0.0 14 1.3822464268929864E-4 0.0 0.0 1.5206092942249745 0.0 15 2.0733696403394796E-4 0.0 0.0 1.560694440604871 0.0 16 2.0733696403394796E-4 0.0 0.0 1.6490890996046774 0.0 17 2.0733696403394796E-4 0.0 0.0 1.7448787769883616 0.0 18 2.0733696403394796E-4 0.0 0.0 1.8918806844884306 0.0 19 2.0733696403394796E-4 0.0 0.0 1.9584358499433279 0.0 20 2.0733696403394796E-4 0.0 0.0 2.0216045116523373 0.0 21 2.0733696403394796E-4 0.0 0.0 2.101498355126752 0.0 22 2.0733696403394796E-4 0.0 0.0 2.17876593039007 0.0 23 2.0733696403394796E-4 0.0 0.0 2.2801537058026704 0.0 24 2.0733696403394796E-4 0.0 0.0 2.3547950128548916 0.0 25 2.0733696403394796E-4 0.0 0.0 2.412089127249606 0.0 26 2.0733696403394796E-4 0.0 0.0 2.471871285212728 0.0 27 2.0733696403394796E-4 0.0 0.0 2.526470019075001 0.0 28 2.0733696403394796E-4 0.0 0.0 2.59067536560418 0.0 29 2.0733696403394796E-4 0.0 0.0 2.6628977414093384 0.0 30 2.0733696403394796E-4 0.0 0.0 2.7570978354020954 0.0 31 2.0733696403394796E-4 0.0 0.0 2.84784231332762 0.0 32 2.0733696403394796E-4 0.0 0.0 2.927114145909933 0.0 33 2.0733696403394796E-4 0.0 0.0 3.008252011168551 0.0 34 2.0733696403394796E-4 0.0 0.0 3.091255909103475 0.0 35 2.0733696403394796E-4 0.0 0.0 3.2005224891493658 0.0 36 2.0733696403394796E-4 0.0 0.0 3.295828380283637 0.0 37 2.0733696403394796E-4 0.0 0.0 3.3856743980316812 0.0 38 2.0733696403394796E-4 0.0 0.0 3.4695767561440856 0.0 39 2.0733696403394796E-4 0.0 0.0 3.5690984988803804 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTGCGAG 115 0.0 45.000004 1 GGTACGA 40 6.8175723E-9 45.0 8 CTACTCG 20 7.0338935E-4 45.0 45 TTCACGG 35 1.2122291E-7 45.0 1 ATAGCCG 25 3.8913087E-5 45.0 34 CCAATCG 25 3.8913087E-5 45.0 41 TGTATCG 20 7.0338935E-4 45.0 1 CACGATA 25 3.8913087E-5 45.0 10 ACGGGTA 20 7.0338935E-4 45.0 5 CCGTATT 25 3.8913087E-5 45.0 40 TATCTCG 50 2.1827873E-11 45.0 1 TACGAGT 25 3.8913087E-5 45.0 28 TGCGAAC 25 3.8913087E-5 45.0 38 GTCGTAC 20 7.0338935E-4 45.0 30 CGTACTC 20 7.0338935E-4 45.0 32 CTACCGA 20 7.0338935E-4 45.0 33 TCGTACA 35 1.2122291E-7 45.0 34 CGTAATT 45 3.8562575E-10 45.0 33 CGTAAGG 165 0.0 45.0 2 GTATACG 25 3.8913087E-5 45.0 1 >>END_MODULE