SRR1546289_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546289_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1753022
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	6717	0.3831668969356916	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4173	0.23804607129859182	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1950	0.1112364819152298	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTACGA	30	2.1661563E-6	45.000004	12
CGACAGT	25	3.8916463E-5	45.000004	24
CTACGTT	25	3.8916463E-5	45.000004	28
ACCGTGC	30	2.1661563E-6	45.000004	25
CCAACGA	30	2.1661563E-6	45.000004	45
TCGAACA	50	2.1827873E-11	45.000004	24
ACGCCCG	20	7.0343027E-4	45.0	32
GACGTAT	20	7.0343027E-4	45.0	21
CACGCTA	20	7.0343027E-4	45.0	40
CGACACG	20	7.0343027E-4	45.0	11
AATGCGC	20	7.0343027E-4	45.0	42
ATATCGT	20	7.0343027E-4	45.0	12
TGTTACG	45	3.8562575E-10	45.0	1
CGTCGAA	20	7.0343027E-4	45.0	34
TCGCGAT	20	7.0343027E-4	45.0	1
CGTTTTT	4475	0.0	42.988827	1
GCGATAT	210	0.0	42.857143	9
GGCGATA	600	0.0	41.625	8
CCCGAAC	65	0.0	41.53846	41
CGACGGT	225	0.0	41.0	28