SRR1546287_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546287_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1654562
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	5359	0.32389236547194966	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3513	0.21232205260364978	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGTACGA	35	1.2123564E-7	45.000004	8
CATTACG	35	1.2123564E-7	45.000004	11
TACTACG	35	1.2123564E-7	45.000004	16
CGTCCCG	35	1.2123564E-7	45.000004	16
TCGACGC	35	1.2123564E-7	45.000004	26
TCGAATA	45	3.8562575E-10	45.000004	24
ACGCGAA	20	7.034187E-4	45.0	2
AATCCGT	25	3.891552E-5	45.0	42
CGTATGA	20	7.034187E-4	45.0	15
ACGCATA	25	3.891552E-5	45.0	36
CGACGAA	25	3.891552E-5	45.0	10
ACGTTCA	20	7.034187E-4	45.0	36
ACGTTAG	75	0.0	45.0	1
CTATCGA	25	3.891552E-5	45.0	31
CCGGCAC	20	7.034187E-4	45.0	21
TAGCGTC	20	7.034187E-4	45.0	1
CCGTGAG	20	7.034187E-4	45.0	1
ATTCGAC	20	7.034187E-4	45.0	21
CAATTCG	20	7.034187E-4	45.0	40
CGCGAAA	25	3.891552E-5	45.0	37