##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546287_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1654562 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.333300897760253 31.0 31.0 33.0 30.0 34.0 2 31.55864996295092 31.0 31.0 34.0 30.0 34.0 3 31.61356540280751 31.0 31.0 34.0 30.0 34.0 4 35.385072303123124 37.0 35.0 37.0 33.0 37.0 5 35.12300717652164 37.0 35.0 37.0 32.0 37.0 6 35.26564250841008 37.0 35.0 37.0 32.0 37.0 7 35.7904007223664 37.0 35.0 37.0 35.0 37.0 8 35.868602083209936 37.0 35.0 37.0 35.0 37.0 9 37.62771053608145 39.0 37.0 39.0 35.0 39.0 10 36.9695846997574 39.0 37.0 39.0 33.0 39.0 11 36.62415551668659 39.0 35.0 39.0 32.0 39.0 12 35.42933960770282 37.0 35.0 39.0 31.0 39.0 13 34.76474740747098 37.0 34.0 39.0 27.0 39.0 14 35.640454694354155 37.0 34.0 40.0 27.0 41.0 15 36.04448367604236 37.0 35.0 40.0 30.0 41.0 16 36.2747524722555 37.0 35.0 40.0 31.0 41.0 17 36.25354021185063 37.0 35.0 40.0 31.0 41.0 18 36.22098658134298 36.0 35.0 40.0 31.0 41.0 19 36.13161851897964 36.0 35.0 40.0 31.0 41.0 20 36.03353757671214 36.0 34.0 40.0 31.0 41.0 21 35.87240248476636 36.0 34.0 40.0 31.0 41.0 22 35.736554447642334 36.0 34.0 40.0 30.0 41.0 23 35.75803928773899 35.0 34.0 40.0 30.0 41.0 24 35.66641141280895 35.0 34.0 40.0 30.0 41.0 25 35.54489586972262 35.0 34.0 40.0 30.0 41.0 26 35.47989981638645 35.0 34.0 40.0 30.0 41.0 27 35.38401945650873 35.0 34.0 40.0 30.0 41.0 28 35.39180641160621 36.0 34.0 40.0 30.0 41.0 29 35.48894027543241 36.0 34.0 40.0 30.0 41.0 30 35.439340441760415 36.0 34.0 40.0 30.0 41.0 31 35.271234320623826 35.0 34.0 40.0 29.0 41.0 32 35.06982754348281 35.0 34.0 40.0 29.0 41.0 33 34.89050274332421 35.0 34.0 40.0 28.0 41.0 34 34.78336502349262 35.0 34.0 40.0 27.0 41.0 35 34.6122006911799 35.0 34.0 40.0 27.0 41.0 36 34.42184940787955 35.0 33.0 40.0 25.0 41.0 37 34.35944920770572 35.0 33.0 40.0 25.0 41.0 38 34.35856438138915 35.0 33.0 40.0 26.0 41.0 39 34.32620475993042 35.0 33.0 40.0 26.0 41.0 40 34.0953497058436 35.0 33.0 40.0 24.0 41.0 41 34.03812489347634 35.0 33.0 39.0 24.0 41.0 42 34.02690923640214 35.0 33.0 39.0 24.0 41.0 43 33.97809148282143 35.0 33.0 39.0 24.0 41.0 44 33.77339259574437 35.0 33.0 39.0 23.0 41.0 45 33.770807621594116 35.0 33.0 39.0 23.0 41.0 46 33.75837774589287 35.0 33.0 39.0 24.0 41.0 47 33.72616982621383 35.0 33.0 39.0 24.0 41.0 48 33.67524577501478 35.0 33.0 39.0 23.0 41.0 49 33.62644252678352 35.0 33.0 39.0 24.0 41.0 50 33.534526358033126 35.0 33.0 39.0 24.0 40.0 51 33.424904597107876 35.0 33.0 38.0 24.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 2.0 12 2.0 13 2.0 14 13.0 15 41.0 16 173.0 17 412.0 18 863.0 19 1713.0 20 3083.0 21 4956.0 22 7629.0 23 10914.0 24 15499.0 25 21050.0 26 27502.0 27 32282.0 28 36057.0 29 42482.0 30 50852.0 31 63485.0 32 80625.0 33 105952.0 34 189248.0 35 280514.0 36 107233.0 37 128313.0 38 179087.0 39 264467.0 40 111.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.81007299817112 24.172620911153526 29.48000739772822 13.537298692947136 2 29.60771491186187 25.822423094450375 30.61698503894082 13.952876954746937 3 28.45375392399922 26.31675331598332 31.448141562540417 13.781351197477038 4 25.403641567979925 28.431451949216775 30.52989250327277 15.635013979530536 5 23.731476970944577 31.647408800637265 30.687033789002772 13.934080439415386 6 21.943027822469027 40.42169468415206 27.052658044848123 10.582619448530789 7 86.35965288698762 5.256255129756394 6.315387395576594 2.068704587679398 8 88.8434522248184 3.8183519263708465 5.616229551990195 1.721966296820548 9 85.38912413073672 4.628475693265045 6.999919011798893 2.982481164199347 10 58.29687856967583 20.25678094867403 11.627971632371588 9.81836884927854 11 53.90568621786309 19.115753897406083 16.229128917502035 10.749430967228788 12 49.00849892599975 20.43821869473613 19.254763496321083 11.29851888294304 13 22.326512998606276 44.32514466064131 19.262862316431782 14.085480024320635 14 14.038337638601636 47.3208619562156 24.716692393515626 13.924108011667135 15 13.121418236367086 23.094208618353377 51.533336314988496 12.251036830291037 16 14.110259996301137 16.177211854255084 51.25223473039995 18.460293419043833 17 15.065135062935084 17.69048243583498 27.461225387746126 39.78315711348381 18 21.38620372038038 23.280904553591828 32.959175902746466 22.37371582328133 19 31.909955625718467 23.415743864539376 23.571555493236275 21.102745016505878 20 35.78651026676546 21.920181897082127 22.252596155357125 20.04071168079528 21 23.557291899608476 29.18699933879782 25.370944092756876 21.88476466883683 22 22.404418812954727 26.11065647585282 23.579593874390927 27.90533083680152 23 20.68843597278313 32.235479843003766 22.573345695114476 24.502738489098626 24 20.67906793459538 23.279272701778478 37.868571863731916 18.17308749989423 25 17.655186085501782 23.877557927717426 36.59645271679151 21.870803269989278 26 16.611465753474334 35.71458790906596 26.600937287330424 21.07300905012928 27 19.214208956811532 35.12403886950142 27.07163587704782 18.59011629663923 28 14.798478388842485 30.113347218176166 38.52499936539096 16.563175027590383 29 16.134118878591433 24.723159361812975 38.67863519167006 20.46408656792553 30 19.36639424814543 30.165385159335216 30.312614456273018 20.15560613624633 31 30.187505817249523 27.07979513611457 23.154345379623127 19.57835366701278 32 33.11571279891597 26.113134473050874 25.103562151191678 15.667590576841484 33 30.46751950062917 27.684486891394823 23.943013317119576 17.904980290856432 34 21.317242871527327 27.36029233114262 27.38114377097987 23.941321026350177 35 20.24777554422258 24.665500597741275 31.277220194831017 23.809503663205124 36 31.975592331988768 24.431299643047524 25.233808101479426 18.359299923484283 37 23.154466257535226 31.71346857959992 27.332792606139872 17.799272556724983 38 21.28055642520498 33.58526304846842 21.762254904923477 23.37192562140313 39 22.006005214673127 31.804670964279367 25.825324164340774 20.36399965670673 40 25.863582023520426 25.050859381516076 24.828504462208127 24.257054132755375 41 17.24933849562603 25.199237018618824 26.376346126648624 31.175078359106518 42 23.898046733818376 25.490552786779823 22.34651829305883 28.26488218634297 43 23.175136380504327 27.835040330915373 23.922464072062578 25.067359216517726 44 21.78256239415628 30.08566617630527 27.230046380854873 20.901725048683577 45 17.416512648060333 37.852978613071016 20.95194982116113 23.778558917707528 46 21.294578263008578 34.81356395227257 23.991666676739825 19.90019110797903 47 23.211822826826676 27.604405274628576 25.668908146083375 23.514863752461377 48 24.444898408158775 21.839556329711428 30.371240243641516 23.344305018488278 49 21.603300450511977 22.560230441651626 32.10608003810072 23.730389069735676 50 19.163500672685583 33.602790345722916 24.635945948232827 22.597763033358678 51 18.335003463152184 35.73489539829877 21.829644340919227 24.10045679762983 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1477.0 1 1735.5 2 1994.0 3 4562.0 4 7130.0 5 5682.0 6 4234.0 7 4805.0 8 5376.0 9 6068.5 10 6761.0 11 6909.5 12 7058.0 13 6918.0 14 6778.0 15 6750.5 16 6723.0 17 6403.0 18 6083.0 19 6270.0 20 6457.0 21 6272.0 22 6087.0 23 6308.5 24 6530.0 25 6775.0 26 8882.0 27 10744.0 28 11176.0 29 11608.0 30 15242.0 31 18876.0 32 20741.5 33 22607.0 34 27962.5 35 33318.0 36 35933.5 37 38549.0 38 52102.5 39 65656.0 40 91846.5 41 118037.0 42 142068.5 43 166100.0 44 173793.5 45 181487.0 46 166948.5 47 152410.0 48 139879.5 49 127349.0 50 123073.0 51 118797.0 52 110977.5 53 103158.0 54 92973.0 55 82788.0 56 75097.5 57 67407.0 58 70382.0 59 73357.0 60 69926.0 61 66495.0 62 56608.5 63 46722.0 64 37005.5 65 27289.0 66 22161.0 67 17033.0 68 13498.5 69 9964.0 70 7581.5 71 5199.0 72 4995.5 73 4792.0 74 3618.5 75 1910.0 76 1375.0 77 1032.0 78 689.0 79 578.0 80 467.0 81 284.0 82 101.0 83 59.5 84 18.0 85 12.0 86 6.0 87 4.0 88 2.0 89 2.0 90 2.0 91 2.5 92 3.0 93 2.0 94 1.0 95 2.0 96 3.0 97 1.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1654562.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 16.722758815603697 #Duplication Level Percentage of deduplicated Percentage of total 1 82.23251649560133 13.751545401560936 2 7.429358007245806 2.484787242198915 3 2.17479708001228 1.0910582112577358 4 1.0069427551287153 0.6735544334054799 5 0.5879555929428029 0.49161197875338775 6 0.35358810600440826 0.35477811700667 7 0.2670279123638802 0.31258103628467304 8 0.20625968628098448 0.2759384789647189 9 0.17150956763829134 0.2581301820765254 >10 2.3542516920243997 9.885351411061817 >50 1.3313420075544953 16.41515614403148 >100 1.874567612427028 52.493080875155925 >500 0.008785319800478163 0.9038932094296185 >1k 7.321099833731802E-4 0.28048480872318243 >5k 3.660549916865901E-4 0.3280484700889425 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 5359 0.32389236547194966 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3513 0.21232205260364978 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.034389765992449965 0.0 2 0.0 0.0 0.0 0.15424021583959985 0.0 3 0.0 0.0 0.0 0.23178339645174978 0.0 4 0.0 0.0 0.0 0.36916114355339963 0.0 5 0.0 0.0 0.0 0.6046313163241994 0.0 6 0.0 0.0 0.0 0.8179203922246492 0.0 7 0.0 0.0 0.0 0.9352928448737491 0.0 8 0.0 0.0 0.0 1.185691439788899 0.0 9 0.0 0.0 0.0 1.2811245513918488 0.0 10 0.0 0.0 0.0 1.4743478938836985 0.0 11 0.0 0.0 0.0 1.6917468187955482 0.0 12 1.2087791209999987E-4 0.0 0.0 1.8809811901880982 0.0 13 1.8131686814999983E-4 0.0 0.0 1.956167251514298 0.0 14 1.8131686814999983E-4 0.0 0.0 1.982941709044448 0.0 15 1.8131686814999983E-4 0.0 0.0 2.028996193554548 0.0 16 1.8131686814999983E-4 0.0 0.0 2.135912706806998 0.0 17 1.8131686814999983E-4 0.0 0.0 2.2519555024229976 0.0 18 1.8131686814999983E-4 0.0 0.0 2.4260196958469975 0.0 19 1.8131686814999983E-4 0.0 0.0 2.5029584868986476 0.0 20 1.8131686814999983E-4 0.0 0.0 2.580924740203147 0.0 21 1.8131686814999983E-4 0.0 0.0 2.6833687707078973 0.0 22 1.8131686814999983E-4 0.0 0.0 2.782005146981497 0.0 23 1.8131686814999983E-4 0.0 0.0 2.895751262267597 0.0 24 1.8131686814999983E-4 0.0 0.0 2.976981219198797 0.0 25 1.8131686814999983E-4 0.0 0.0 3.044370655194547 0.0 26 1.8131686814999983E-4 0.0 0.0 3.113452381959697 0.0 27 1.8131686814999983E-4 0.0 0.0 3.181506646471997 0.0 28 1.8131686814999983E-4 0.0 0.0 3.2528246146109967 0.0 29 1.8131686814999983E-4 0.0 0.0 3.3250491670907465 0.0 30 1.8131686814999983E-4 0.0 0.0 3.4236251044082966 0.0 31 1.8131686814999983E-4 0.0 0.0 3.5317503967817463 0.0 32 1.8131686814999983E-4 0.0 0.0 3.6212000517357463 0.0 33 1.8131686814999983E-4 0.0 0.0 3.702973959271396 0.0 34 1.8131686814999983E-4 0.0 0.0 3.7924840531814463 0.0 35 1.8131686814999983E-4 0.0 0.0 3.912032308248346 0.0 36 1.8131686814999983E-4 0.0 0.0 4.015020289357546 0.0 37 1.8131686814999983E-4 0.0 0.0 4.111903935905696 0.0 38 1.8131686814999983E-4 0.0 0.0 4.202743686848846 0.0 39 1.8131686814999983E-4 0.0 0.0 4.302286647463196 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTACGA 35 1.2123564E-7 45.000004 8 CATTACG 35 1.2123564E-7 45.000004 11 TACTACG 35 1.2123564E-7 45.000004 16 CGTCCCG 35 1.2123564E-7 45.000004 16 TCGACGC 35 1.2123564E-7 45.000004 26 TCGAATA 45 3.8562575E-10 45.000004 24 ACGCGAA 20 7.034187E-4 45.0 2 AATCCGT 25 3.891552E-5 45.0 42 CGTATGA 20 7.034187E-4 45.0 15 ACGCATA 25 3.891552E-5 45.0 36 CGACGAA 25 3.891552E-5 45.0 10 ACGTTCA 20 7.034187E-4 45.0 36 ACGTTAG 75 0.0 45.0 1 CTATCGA 25 3.891552E-5 45.0 31 CCGGCAC 20 7.034187E-4 45.0 21 TAGCGTC 20 7.034187E-4 45.0 1 CCGTGAG 20 7.034187E-4 45.0 1 ATTCGAC 20 7.034187E-4 45.0 21 CAATTCG 20 7.034187E-4 45.0 40 CGCGAAA 25 3.891552E-5 45.0 37 >>END_MODULE