##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546286_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1452744 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.25774878436944 31.0 31.0 33.0 30.0 34.0 2 31.495200806198476 31.0 31.0 34.0 30.0 34.0 3 31.58302288634474 31.0 31.0 34.0 30.0 34.0 4 35.35448089959415 37.0 35.0 37.0 33.0 37.0 5 35.07637408930961 37.0 35.0 37.0 32.0 37.0 6 35.21518106424807 37.0 35.0 37.0 32.0 37.0 7 35.72280525681056 37.0 35.0 37.0 35.0 37.0 8 35.80210071423458 37.0 35.0 37.0 35.0 37.0 9 37.52958814491748 39.0 37.0 39.0 35.0 39.0 10 36.86055767568133 39.0 37.0 39.0 32.0 39.0 11 36.5341298948748 39.0 35.0 39.0 32.0 39.0 12 35.44985076517267 37.0 35.0 39.0 31.0 39.0 13 34.8393591713337 37.0 34.0 39.0 27.0 39.0 14 35.76692865363753 37.0 34.0 40.0 29.0 41.0 15 36.12404663175343 37.0 35.0 40.0 30.0 41.0 16 36.31557177314104 37.0 35.0 40.0 31.0 41.0 17 36.28212816573326 37.0 35.0 40.0 31.0 41.0 18 36.2524987196643 37.0 35.0 40.0 31.0 41.0 19 36.187143777568515 37.0 35.0 40.0 31.0 41.0 20 36.09596666721735 36.0 34.0 40.0 31.0 41.0 21 35.917053520785494 36.0 34.0 40.0 30.0 41.0 22 35.81068378186384 36.0 34.0 40.0 30.0 41.0 23 35.82060776021102 36.0 34.0 40.0 30.0 41.0 24 35.70151520157715 36.0 34.0 40.0 30.0 41.0 25 35.562423937046034 36.0 34.0 40.0 30.0 41.0 26 35.521482793940294 36.0 34.0 40.0 30.0 41.0 27 35.427425616626195 36.0 34.0 40.0 29.0 41.0 28 35.454183944315034 36.0 34.0 40.0 29.0 41.0 29 35.50662195128667 36.0 34.0 40.0 30.0 41.0 30 35.445744742363416 36.0 34.0 40.0 29.0 41.0 31 35.31777931968743 36.0 34.0 40.0 29.0 41.0 32 35.12404800845847 35.0 34.0 40.0 29.0 41.0 33 34.97810144113485 35.0 34.0 40.0 28.0 41.0 34 34.86042138188146 35.0 34.0 40.0 27.0 41.0 35 34.72180714564989 35.0 34.0 40.0 27.0 41.0 36 34.532393869807755 35.0 33.0 40.0 25.0 41.0 37 34.42791985373886 35.0 33.0 40.0 25.0 41.0 38 34.423725721806456 35.0 33.0 40.0 26.0 41.0 39 34.377965422675985 35.0 33.0 40.0 25.0 41.0 40 34.194003210476176 35.0 33.0 40.0 24.0 41.0 41 34.17085391507382 35.0 33.0 40.0 24.0 41.0 42 34.161430369012024 35.0 33.0 40.0 24.0 41.0 43 34.094732451140736 35.0 33.0 40.0 24.0 41.0 44 33.89135043751686 35.0 33.0 39.0 23.0 41.0 45 33.88223251997599 35.0 33.0 39.0 24.0 41.0 46 33.860152924396864 35.0 33.0 39.0 24.0 41.0 47 33.84723323586262 35.0 33.0 39.0 24.0 41.0 48 33.78014708716746 35.0 33.0 39.0 24.0 41.0 49 33.716946688473676 35.0 33.0 39.0 24.0 41.0 50 33.644976678616466 35.0 33.0 39.0 24.0 41.0 51 33.53714832069518 35.0 33.0 39.0 24.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 2.0 13 3.0 14 13.0 15 55.0 16 128.0 17 347.0 18 880.0 19 1657.0 20 2971.0 21 4464.0 22 6854.0 23 9976.0 24 13658.0 25 18812.0 26 24408.0 27 28418.0 28 32101.0 29 37141.0 30 44632.0 31 55454.0 32 69165.0 33 91251.0 34 160082.0 35 229097.0 36 98270.0 37 118497.0 38 163800.0 39 240492.0 40 115.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.48191009565347 24.353017462126843 30.03323365988777 13.131838782331917 2 29.02803246821188 26.66491825125418 31.200128859592606 13.106920420941337 3 28.87872880562577 25.903049677025 31.639917287560642 13.578304229788593 4 26.242063295391343 28.861382322005802 29.8757386022589 15.020815780343957 5 24.300496164499734 32.363513461421974 28.958508863227106 14.37748151085119 6 21.851888563986495 41.10263060800802 26.036108220030506 11.009372607974976 7 85.80031994625344 5.7990258435071835 6.293400626676138 2.107253583563243 8 88.61506225460232 4.124883668423342 5.3368659584895894 1.9231881184847435 9 84.01370096864967 5.608971711464649 7.2893778945223655 3.0879494253633126 10 55.455882109993226 21.631478085609025 12.20813852956887 10.704501274828877 11 50.94510801627816 19.55994999807261 17.074377866988264 12.420564118660963 12 44.99574598139796 21.47260632293095 20.758302908151745 12.773344787519342 13 22.634889560720953 42.28714763234266 21.287095317550786 13.790867489385604 14 15.364785536887435 45.22758311168382 25.77962806936391 13.628003282064839 15 15.143824376490283 22.898941589158174 48.67932684629914 13.277907188052405 16 16.016311201422962 17.7699580930983 47.29091980417747 18.92281090130126 17 16.611116617931305 18.710591817966552 27.24719565181477 37.43109591228737 18 21.978683099018134 24.009942563865348 32.92610397977896 21.085270357337563 19 30.535042650322424 24.742280814789115 24.110373197204737 20.61230333768372 20 33.53653499859576 22.290024945895492 23.371702103054634 20.801737952454115 21 22.571629963710055 28.840594075762834 26.457448800339222 22.130327160187893 22 23.26266706315772 24.714402537542746 24.381377586140434 27.641552813159098 23 20.766563138446966 30.512740028525325 23.28139025182689 25.439306581200817 24 21.30093120329528 24.17583552229436 37.152588480833515 17.370644793576844 25 17.351164417130615 24.885595810411193 35.67414492849394 22.08909484396425 26 17.39983094061996 35.35137642970819 26.399214176757912 20.849578452913935 27 18.144008854966877 34.96362745260004 27.980084584758224 18.912279107674856 28 16.493752512486715 29.08764379684239 37.376027710319235 17.042575980351664 29 16.153981706343306 24.90796726746075 37.41257922937558 21.525471796820362 30 18.80138551596152 30.791935812503784 30.898286277554753 19.508392393979946 31 29.41646979784463 26.816149300909174 23.930575517778767 19.836805383467425 32 30.128708155050028 27.48977108148442 25.16933472105202 17.21218604241353 33 28.981568672801266 27.800699916847016 23.812936071324337 19.404795339027388 34 19.618046951148997 28.287984669012573 27.621384084188268 24.47258429565016 35 21.4045970935003 26.208058680676018 30.00542421789386 22.38192000792982 36 31.02067535642894 24.969712488917526 24.429424592357634 19.580187562295905 37 20.785974679640734 33.12620805868068 27.44310078031642 18.644716481362167 38 21.33280192518434 33.41242503841007 22.411519166487697 22.84325386991789 39 22.136935344424067 32.00770404145534 25.385339743272045 20.470020870848547 40 23.9277532724279 26.56951259134438 24.39521347188493 25.107520664342786 41 17.850357667971785 25.288419707808117 25.830772661941815 31.030449962278283 42 22.844217563452336 26.874590430247864 22.744337612132625 27.536854394167175 43 23.1897705308024 26.586446063449582 24.542658582654617 25.6811248230934 44 20.823627562736448 31.329676804722652 26.636076280473365 21.210619352067535 45 18.247192898404673 37.999330921346086 21.12533247426938 22.628143705979856 46 21.84906631863563 32.66301564487618 25.31719284333647 20.170725193151718 47 22.762441283529654 28.303679106573494 25.446947294223897 23.486932315672963 48 24.397691540973497 23.697843529210928 29.990005121342783 21.914459808472795 49 21.878803147698424 23.856371115626704 31.373731366297157 22.89109437037771 50 19.56194622039396 33.96668649121938 25.52934309141872 20.942024196967946 51 18.901127796776308 34.75629567219001 22.94113759891626 23.401438932117426 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1010.0 1 1378.5 2 1747.0 3 4084.0 4 6421.0 5 5124.0 6 3827.0 7 4167.5 8 4508.0 9 4882.5 10 5257.0 11 5367.0 12 5477.0 13 5301.0 14 5125.0 15 5013.5 16 4902.0 17 4597.0 18 4292.0 19 4565.5 20 4839.0 21 5595.0 22 6351.0 23 5715.0 24 5079.0 25 6591.0 26 8958.5 27 9814.0 28 11890.0 29 13966.0 30 18479.0 31 22992.0 32 24888.0 33 26784.0 34 32421.5 35 38059.0 36 36227.5 37 34396.0 38 45119.5 39 55843.0 40 81716.5 41 107590.0 42 127943.5 43 148297.0 44 146662.0 45 145027.0 46 138228.5 47 131430.0 48 125802.0 49 120174.0 50 112513.0 51 104852.0 52 95977.5 53 87103.0 54 79866.0 55 72629.0 56 67707.5 57 62786.0 58 58576.5 59 54367.0 60 50385.0 61 46403.0 62 40786.5 63 35170.0 64 29052.5 65 22935.0 66 20111.5 67 17288.0 68 13844.5 69 10401.0 70 8721.0 71 7041.0 72 5983.5 73 4926.0 74 3743.0 75 1957.0 76 1354.0 77 961.5 78 569.0 79 567.0 80 565.0 81 383.0 82 201.0 83 193.5 84 186.0 85 136.5 86 87.0 87 46.5 88 6.0 89 4.0 90 2.0 91 2.0 92 2.0 93 1.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1452744.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 17.43466015607958 #Duplication Level Percentage of deduplicated Percentage of total 1 81.91946992676111 14.282381183392614 2 6.980048648196066 2.433895521084022 3 2.069061204224426 1.0822013681334488 4 0.9319790403441405 0.6499495136395708 5 0.5481512748275802 0.477841559537032 6 0.38304291150817504 0.4006933792404177 7 0.2847055690838876 0.34746213890645716 8 0.24389510404468304 0.3401782602200575 9 0.21337830116403317 0.3348160348928867 >10 3.0965161852427645 13.74206962437847 >50 1.657896559860289 21.266525300116914 >100 1.663081225113993 42.94767579927511 >500 0.006381127002835465 0.6506201681734051 >1k 0.0019941021883860825 0.6759997087722394 >5k 3.9882043767721655E-4 0.3676904402373588 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 5288 0.36400081500938913 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3239 0.22295738271849685 No Hit AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 2047 0.14090576178597194 No Hit AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 1854 0.12762055806115877 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.033866944210404586 0.0 2 0.0 0.0 0.0 0.10986106292643438 0.0 3 0.0 0.0 0.0 0.16183167853386418 0.0 4 0.0 0.0 0.0 0.26116094783389227 0.0 5 6.883525246017192E-5 0.0 0.0 0.4265720594956854 0.0 6 6.883525246017192E-5 0.0 0.0 0.5847554696491605 0.0 7 6.883525246017192E-5 0.0 0.0 0.6730022633031009 0.0 8 6.883525246017192E-5 0.0 0.0 0.8772364573524309 0.0 9 1.3767050492034385E-4 0.0 0.0 0.9491004609208504 0.0 10 1.3767050492034385E-4 0.0 0.0 1.0867709658411944 0.0 11 1.3767050492034385E-4 0.0 0.0 1.2329770420665995 0.0 12 1.3767050492034385E-4 0.0 0.0 1.3617677994195811 0.0 13 1.3767050492034385E-4 0.0 0.0 1.4167671661352585 0.0 14 1.3767050492034385E-4 0.0 0.0 1.4388632821749736 0.0 15 1.3767050492034385E-4 0.0 0.0 1.4773421883002098 0.0 16 1.3767050492034385E-4 0.0 0.0 1.554713012065443 0.0 17 1.3767050492034385E-4 0.0 0.0 1.6481224496538964 0.0 18 1.3767050492034385E-4 0.0 0.0 1.7767067012494975 0.0 19 1.3767050492034385E-4 0.0 0.0 1.8369375471521479 0.0 20 1.3767050492034385E-4 0.0 0.0 1.8946903239662323 0.0 21 1.3767050492034385E-4 0.0 0.0 1.9745392168200315 0.0 22 1.3767050492034385E-4 0.0 0.0 2.052736063614787 0.0 23 1.3767050492034385E-4 0.0 0.0 2.1522030034197352 0.0 24 1.3767050492034385E-4 0.0 0.0 2.225237206279978 0.0 25 1.3767050492034385E-4 0.0 0.0 2.288152627028575 0.0 26 1.3767050492034385E-4 0.0 0.0 2.3507927067673315 0.0 27 1.3767050492034385E-4 0.0 0.0 2.409027330348637 0.0 28 2.0650575738051578E-4 0.0 0.0 2.469189340998827 0.0 29 2.0650575738051578E-4 0.0 0.0 2.5453899654722374 0.0 30 2.0650575738051578E-4 0.0 0.0 2.6420346599263187 0.0 31 2.0650575738051578E-4 0.0 0.0 2.732690687416365 0.0 32 2.0650575738051578E-4 0.0 0.0 2.8137097795619876 0.0 33 2.0650575738051578E-4 0.0 0.0 2.895554894737132 0.0 34 2.0650575738051578E-4 0.0 0.0 2.984903052430435 0.0 35 2.0650575738051578E-4 0.0 0.0 3.095727808891312 0.0 36 2.0650575738051578E-4 0.0 0.0 3.1848006255747743 0.0 37 2.0650575738051578E-4 0.0 0.0 3.284061059622342 0.0 38 2.0650575738051578E-4 0.0 0.0 3.380086236804282 0.0 39 2.0650575738051578E-4 0.0 0.0 3.476593260753443 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GACCGAC 30 2.165898E-6 45.000004 10 CGATCTA 30 2.165898E-6 45.000004 11 GTCGACG 35 1.2122291E-7 45.0 12 ACGCATT 35 1.2122291E-7 45.0 32 GCGAATC 25 3.891316E-5 45.0 20 TTTAACG 45 3.8562575E-10 45.0 1 GACCGTA 20 7.0339016E-4 45.0 30 CACGAGT 20 7.0339016E-4 45.0 38 TACGGAC 25 3.891316E-5 45.0 22 TACGCAT 35 1.2122291E-7 45.0 31 CGTAAGA 20 7.0339016E-4 45.0 22 AACCTCG 35 1.2122291E-7 45.0 13 TATAGCG 100 0.0 45.0 1 ACCGTTA 25 3.891316E-5 45.0 27 ATCGGCC 35 1.2122291E-7 45.0 24 ATCGGAC 25 3.891316E-5 45.0 25 TATGTCG 40 6.8175723E-9 45.0 1 TAATGCG 70 0.0 45.0 1 TGGTCGA 20 7.0339016E-4 45.0 11 AATGTCG 35 1.2122291E-7 45.0 18 >>END_MODULE