SRR1546285_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546285_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1518213
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	8256	0.5437972142248815	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2521	0.16605048171765097	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCACTGAACTCGTATGCCG	2496	0.16440380895170836	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTAGACG	55	1.8189894E-12	45.000004	1
TGTACCG	65	0.0	45.000004	1
AATACGG	115	0.0	45.000004	2
CTAGAAT	25	3.8913997E-5	45.0	19
TCGCATA	20	7.034003E-4	45.0	16
ACCGGTA	35	1.2122655E-7	45.0	41
CCCTCGT	20	7.034003E-4	45.0	23
GGTGTCG	20	7.034003E-4	45.0	10
CGACGTA	35	1.2122655E-7	45.0	36
CTATCGT	20	7.034003E-4	45.0	13
ACACCTA	40	6.8175723E-9	45.0	36
ACACCGT	20	7.034003E-4	45.0	30
GACGTAT	25	3.8913997E-5	45.0	45
GACGTAG	45	3.8562575E-10	45.0	1
ACTCTCG	25	3.8913997E-5	45.0	45
ATTACAC	20	7.034003E-4	45.0	38
CCAATCG	25	3.8913997E-5	45.0	20
GCACGTC	45	3.8562575E-10	45.0	32
CCGCTTG	35	1.2122655E-7	45.0	38
TACGGGT	90	0.0	45.0	4