SRR1546284_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546284_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1762662
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6371	0.36144195540608465	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	4494	0.25495528921596994	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCGAAT	30	2.1661635E-6	45.000004	17
CGTTAGT	30	2.1661635E-6	45.000004	32
ACGTTAG	70	0.0	45.0	1
CTATCGA	25	3.8916558E-5	45.0	37
TACGCCC	25	3.8916558E-5	45.0	34
TACCGAA	20	7.034313E-4	45.0	32
CGTTTTT	5400	0.0	42.666668	1
TCTAGCG	55	6.184564E-11	40.909092	1
TATTACG	55	6.184564E-11	40.909092	1
TCACGAC	205	0.0	40.609756	25
ACTAACG	50	1.0822987E-9	40.5	1
GCGCGAC	545	0.0	40.04587	9
CGACGGT	210	0.0	39.642857	28
CACAACG	315	0.0	39.285713	12
TTCACGG	35	6.2501877E-6	38.571426	2
TATCTCG	35	6.2501877E-6	38.571426	1
TGTAACG	35	6.2501877E-6	38.571426	1
TACGGGA	545	0.0	38.394497	4
GCGATAT	160	0.0	37.96875	9
TTGTACG	190	0.0	37.894737	1