##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546284_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1762662 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.307265374757044 31.0 31.0 33.0 30.0 34.0 2 31.548451716778374 31.0 31.0 34.0 30.0 34.0 3 31.630098112967772 31.0 31.0 34.0 30.0 34.0 4 35.41127567281759 37.0 35.0 37.0 33.0 37.0 5 35.15753672570238 37.0 35.0 37.0 32.0 37.0 6 35.296285391073276 37.0 35.0 37.0 32.0 37.0 7 35.773402955302835 37.0 35.0 37.0 35.0 37.0 8 35.833980649721845 37.0 35.0 37.0 35.0 37.0 9 37.56126926205932 39.0 37.0 39.0 35.0 39.0 10 36.9270591866166 39.0 37.0 39.0 32.0 39.0 11 36.64947562266617 39.0 35.0 39.0 32.0 39.0 12 35.92041185434304 37.0 35.0 39.0 31.0 39.0 13 35.54231100460554 37.0 35.0 39.0 30.0 39.0 14 36.47863572256053 38.0 35.0 41.0 31.0 41.0 15 36.70305027282599 38.0 35.0 41.0 31.0 41.0 16 36.82309313980786 38.0 35.0 41.0 32.0 41.0 17 36.77682959069861 38.0 35.0 40.0 31.0 41.0 18 36.73366930245277 38.0 35.0 40.0 31.0 41.0 19 36.68998310509899 38.0 35.0 40.0 31.0 41.0 20 36.625095452219426 38.0 35.0 40.0 31.0 41.0 21 36.47643677574033 38.0 35.0 40.0 31.0 41.0 22 36.40605686172392 38.0 35.0 40.0 31.0 41.0 23 36.36043325379455 38.0 35.0 40.0 31.0 41.0 24 36.24859161881291 38.0 35.0 40.0 31.0 41.0 25 36.112136076003225 38.0 35.0 40.0 30.0 41.0 26 36.094709592650204 38.0 35.0 40.0 30.0 41.0 27 36.04608370748334 38.0 34.0 40.0 30.0 41.0 28 36.02906229328141 38.0 35.0 40.0 30.0 41.0 29 36.034956219626906 38.0 35.0 40.0 30.0 41.0 30 35.92209283458769 37.0 35.0 40.0 30.0 41.0 31 35.80321751986484 37.0 34.0 40.0 30.0 41.0 32 35.641007181183916 37.0 34.0 40.0 29.0 41.0 33 35.49155198217242 37.0 34.0 40.0 29.0 41.0 34 35.30211691180725 37.0 34.0 40.0 27.0 41.0 35 35.151915682076314 37.0 34.0 40.0 27.0 41.0 36 35.00041414633095 37.0 34.0 40.0 26.0 41.0 37 34.92988445884691 37.0 34.0 40.0 26.0 41.0 38 34.88325612057218 37.0 34.0 40.0 26.0 41.0 39 34.81374194258457 37.0 34.0 40.0 26.0 41.0 40 34.66152898286796 37.0 33.0 40.0 25.0 41.0 41 34.59825706800283 36.0 33.0 40.0 24.0 41.0 42 34.54082858767024 36.0 33.0 40.0 25.0 41.0 43 34.50069213496405 36.0 33.0 40.0 25.0 41.0 44 34.25118825957557 36.0 33.0 40.0 24.0 41.0 45 34.22909270183393 35.0 33.0 40.0 24.0 41.0 46 34.22371674206399 35.0 33.0 40.0 24.0 41.0 47 34.17681608839358 35.0 33.0 40.0 24.0 41.0 48 34.059082796361416 35.0 33.0 40.0 24.0 41.0 49 33.9842499583017 35.0 33.0 39.0 24.0 41.0 50 33.93247656101964 35.0 33.0 39.0 24.0 41.0 51 33.862251526384526 35.0 33.0 39.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 1.0 11 0.0 12 3.0 13 5.0 14 13.0 15 58.0 16 166.0 17 411.0 18 871.0 19 1705.0 20 3052.0 21 4942.0 22 7595.0 23 10782.0 24 14983.0 25 21018.0 26 27346.0 27 32127.0 28 36061.0 29 41293.0 30 49807.0 31 61589.0 32 76542.0 33 100532.0 34 163655.0 35 222660.0 36 135456.0 37 169297.0 38 237487.0 39 343080.0 40 124.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.604989498837554 23.830774135937578 28.282960658367855 13.281275706857015 2 31.43472770162402 25.497911681309294 29.60624328430522 13.461117332761471 3 29.770199845461015 25.205115898567055 31.162695967803245 13.861988288168689 4 26.290349482770946 27.646990744680487 30.612505403758632 15.450154368789931 5 23.58092476039082 32.22591739085542 29.70836155768945 14.484796291064312 6 21.522163636590566 40.486775116273 27.35464882093107 10.636412426205364 7 85.63246952620524 5.2045712677756715 7.028857489410903 2.1341017166081757 8 86.87263922408268 4.102998759830302 6.900301929694972 2.1240600863920593 9 82.55541901964189 5.951112578588521 8.37035120743512 3.1231171943344784 10 47.81722190641201 25.187982721588142 14.579993214808058 12.414802157191792 11 41.275638778166204 23.130412977644042 20.775111734410796 14.81883650977896 12 36.64395102407608 22.98931956325149 25.477090900013728 14.889638512658696 13 24.02162184241789 34.86079577366506 25.48667867123703 15.630903712680025 14 18.813306237951462 36.880014432715974 28.56679272600192 15.739886603330644 15 17.15053708538563 24.301993235231713 42.226757029992136 16.320712649390522 16 20.152076802018765 20.998977682618676 39.2011627867396 19.64778272862296 17 20.539388720015523 20.988425461035636 28.299356314483436 30.172829504465405 18 24.572436462577624 22.948869380516516 32.44700345273229 20.031690704173574 19 28.63073011161527 24.872777651075477 25.751448661172706 20.74504357613655 20 30.404694717421716 24.4320238366743 25.589534465484594 19.573746980419386 21 24.367122000701215 26.792714655447273 28.043266377785418 20.796896966066097 22 24.98771744100684 23.979356223711637 26.93131184537932 24.101614489902204 23 21.550302894145332 28.763313669892472 26.333409354714632 23.352974081247567 24 21.582867276880084 25.51912958922357 34.61701676214725 18.280986371749094 25 21.245309650971087 25.708842648221836 31.996434937611408 21.049412763195665 26 20.11225067539891 30.72455184261078 26.990994302934997 22.172203179055316 27 19.65510120488216 30.866893369233576 28.403743882831762 21.074261543052497 28 18.004642977496538 28.266281340381767 34.065975212491104 19.663100469630592 29 19.433050692645555 25.59293840793073 33.83359940816788 21.14041149125584 30 21.068645038016363 27.710304074178715 31.170865429673984 20.05018545813094 31 27.721196690006366 26.398651584932338 26.112380025211866 19.767771699849433 32 28.113557789298234 26.357123487089414 26.562948540332748 18.966370183279608 33 27.19750014466755 27.516052425252262 25.182593146048422 20.103854284031765 34 21.15533210564476 27.165730015170237 29.169857862709925 22.50908001647508 35 21.78613937328881 27.798295986411464 29.281166780698737 21.13439785960099 36 27.936666246847096 26.81234405688669 25.92408527556616 19.326904420700057 37 22.082906422218212 31.208422261329737 27.049882507253237 19.658788809198814 38 22.141851358910557 31.435068095868633 25.10991897482331 21.3131615703975 39 21.646747930119332 30.30320050015261 26.22505052017914 21.82500104954892 40 24.594959215096257 26.071305786361766 26.184600337444163 23.14913466109782 41 20.33503870849885 26.007368400748415 26.072043307225094 27.58554958352764 42 22.66855472007679 27.061228982073704 25.172324586335893 25.097891711513608 43 22.738278807848584 26.704439081344013 26.817563435304102 23.7397186755033 44 22.20652626538724 28.3685130785142 27.928156390731747 21.496804265366816 45 19.958335744459234 33.09806417793088 24.262961361849296 22.680638715760594 46 22.63304025388872 30.53795906418814 26.465595786373108 20.363404895550026 47 22.087274815024095 28.461724369164365 27.28639977488594 22.1646010409256 48 22.47424633877624 27.112117921643513 28.725927035359017 21.68770870422123 49 23.040095038073098 25.892542075565256 29.719991694380433 21.347371191981217 50 20.60667331570091 31.266119085791832 26.789140515878824 21.338067082628434 51 20.17806022935764 31.80059478221009 25.37213600792438 22.64920898050789 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1126.0 1 1714.5 2 2303.0 3 7027.5 4 11752.0 5 8854.5 6 5957.0 7 6201.5 8 6446.0 9 6761.0 10 7076.0 11 7253.0 12 7430.0 13 7360.0 14 7290.0 15 7176.0 16 7062.0 17 7009.0 18 6956.0 19 7169.5 20 7383.0 21 7864.0 22 8345.0 23 8907.5 24 9470.0 25 10734.5 26 14202.5 27 16406.0 28 18687.5 29 20969.0 30 24776.5 31 28584.0 32 33858.0 33 39132.0 34 44381.5 35 49631.0 36 54472.5 37 59314.0 38 67011.0 39 74708.0 40 91961.5 41 109215.0 42 126268.5 43 143322.0 44 145473.5 45 147625.0 46 144646.5 47 141668.0 48 133985.5 49 126303.0 50 124294.5 51 122286.0 52 117131.0 53 111976.0 54 103591.5 55 95207.0 56 91259.5 57 87312.0 58 79901.5 59 72491.0 60 66050.5 61 59610.0 62 53832.0 63 48054.0 64 42470.5 65 36887.0 66 31013.0 67 25139.0 68 20828.0 69 16517.0 70 14255.5 71 11994.0 72 10107.0 73 8220.0 74 6447.5 75 3574.5 76 2474.0 77 1943.5 78 1413.0 79 999.5 80 586.0 81 400.0 82 214.0 83 142.0 84 70.0 85 56.0 86 42.0 87 24.5 88 7.0 89 7.5 90 8.0 91 6.5 92 5.0 93 3.5 94 2.0 95 1.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1762662.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 18.691546728050366 #Duplication Level Percentage of deduplicated Percentage of total 1 80.58953203742571 15.063430038692546 2 6.058089559390191 2.264701281641116 3 2.0321311057874434 1.1395102056405197 4 1.1420379346624576 0.8538582168379781 5 0.7405358204643467 0.6920879946002225 6 0.5617000367470432 0.6299425490402978 7 0.44339350890255813 0.5801397343396466 8 0.34508168985119836 0.5160088424678606 9 0.3018444272261505 0.5077745294489271 >10 4.511427197794492 21.16389760034285 >50 2.2488618360203994 30.56888965512731 >100 1.0213715134949155 24.9778206461199 >500 0.003378973428089255 0.41810754697268687 >1k 3.071794025535686E-4 0.2580301175632045 >5k 3.071794025535686E-4 0.3658010411649256 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6371 0.36144195540608465 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 4494 0.25495528921596994 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.03579812805858412 0.0 2 0.0 0.0 0.0 0.1003595697870607 0.0 3 0.0 0.0 0.0 0.14120687914075417 0.0 4 0.0 0.0 0.0 0.1993008302215626 0.0 5 0.0 0.0 0.0 0.31140400144781016 0.0 6 0.0 0.0 0.0 0.4278188331058365 0.0 7 0.0 0.0 0.0 0.4994718215971071 0.0 8 0.0 0.0 0.0 0.6705199295156984 0.0 9 0.0 0.0 0.0 0.7345707798772538 0.0 10 0.0 0.0 0.0 0.8419651640530061 0.0 11 0.0 0.0 0.0 0.977952664776344 0.0 12 0.0 0.0 0.0 1.0792766849231445 0.0 13 0.0 0.0 0.0 1.1233577396006722 0.0 14 0.0 0.0 0.0 1.1436679295293142 0.0 15 0.0 0.0 0.0 1.1723745108251042 0.0 16 0.0 0.0 0.0 1.2339291367261562 0.0 17 0.0 0.0 0.0 1.306716772699474 0.0 18 0.0 0.0 0.0 1.3959000647883713 0.0 19 0.0 0.0 0.0 1.441285964070253 0.0 20 0.0 0.0 0.0 1.4963730993236366 0.0 21 0.0 0.0 0.0 1.5659269899731203 0.0 22 0.0 0.0 0.0 1.6419483712702718 0.0 23 0.0 0.0 0.0 1.7209765683948481 0.0 24 0.0 0.0 0.0 1.7848572216340965 0.0 25 0.0 0.0 0.0 1.8391501036500475 0.0 26 0.0 0.0 0.0 1.8978681108459818 0.0 27 0.0 0.0 0.0 1.972187520920063 0.0 28 0.0 0.0 0.0 2.0415144820731372 0.0 29 0.0 0.0 0.0 2.1213369324351463 0.0 30 0.0 0.0 0.0 2.2148318849558226 0.0 31 0.0 0.0 0.0 2.293179293591171 0.0 32 0.0 0.0 0.0 2.366874647550126 0.0 33 0.0 0.0 0.0 2.4485125338834104 0.0 34 0.0 0.0 0.0 2.5400218533105043 0.0 35 0.0 0.0 0.0 2.646224857630107 0.0 36 0.0 0.0 0.0 2.730642630294407 0.0 37 0.0 0.0 0.0 2.829583890728909 0.0 38 0.0 0.0 0.0 2.936297486415433 0.0 39 0.0 0.0 0.0 3.1218123497301242 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGCGAAT 30 2.1661635E-6 45.000004 17 CGTTAGT 30 2.1661635E-6 45.000004 32 ACGTTAG 70 0.0 45.0 1 CTATCGA 25 3.8916558E-5 45.0 37 TACGCCC 25 3.8916558E-5 45.0 34 TACCGAA 20 7.034313E-4 45.0 32 CGTTTTT 5400 0.0 42.666668 1 TCTAGCG 55 6.184564E-11 40.909092 1 TATTACG 55 6.184564E-11 40.909092 1 TCACGAC 205 0.0 40.609756 25 ACTAACG 50 1.0822987E-9 40.5 1 GCGCGAC 545 0.0 40.04587 9 CGACGGT 210 0.0 39.642857 28 CACAACG 315 0.0 39.285713 12 TTCACGG 35 6.2501877E-6 38.571426 2 TATCTCG 35 6.2501877E-6 38.571426 1 TGTAACG 35 6.2501877E-6 38.571426 1 TACGGGA 545 0.0 38.394497 4 GCGATAT 160 0.0 37.96875 9 TTGTACG 190 0.0 37.894737 1 >>END_MODULE