SRR1546281_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546281_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1585945
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	6309	0.397806985740363	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3612	0.22775064709053594	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CAAGTCG	30	2.1660253E-6	45.000004	1
GACCGGC	30	2.1660253E-6	45.000004	33
TACGGGT	30	2.1660253E-6	45.000004	4
CGTGTCA	30	2.1660253E-6	45.000004	36
ATACGTC	30	2.1660253E-6	45.000004	37
GCGCTAA	30	2.1660253E-6	45.000004	20
TCGACTA	30	2.1660253E-6	45.000004	1
TACGTCT	30	2.1660253E-6	45.000004	38
CGGGTAT	35	1.21232E-7	45.0	6
AAATCGT	20	7.0340995E-4	45.0	12
CGTATTA	20	7.0340995E-4	45.0	31
TTAGCGA	45	3.8562575E-10	45.0	27
ACTCTCG	20	7.0340995E-4	45.0	43
TATGCGA	20	7.0340995E-4	45.0	13
ACGGGTA	20	7.0340995E-4	45.0	5
AGTATCG	45	3.8562575E-10	45.0	1
TATCTCG	25	3.8914783E-5	45.0	1
CGCTATA	20	7.0340995E-4	45.0	31
ACGTGTA	25	3.8914783E-5	45.0	10
CCGAGTA	25	3.8914783E-5	45.0	17