SRR1546279_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546279_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2206489
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	6360	0.2882407299560524	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5250	0.23793456482221303	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAACTA	25	3.8919767E-5	45.0	10
GTCGATA	20	7.034701E-4	45.0	44
ACGTTGA	25	3.8919767E-5	45.0	14
CGTCTAG	35	1.2126111E-7	45.0	18
CATTACG	20	7.034701E-4	45.0	39
CTACGAT	20	7.034701E-4	45.0	41
TTAACGC	25	3.8919767E-5	45.0	28
ACTCGAC	25	3.8919767E-5	45.0	35
TCCAACG	25	3.8919767E-5	45.0	27
CGACTCA	20	7.034701E-4	45.0	20
CCCGGTA	20	7.034701E-4	45.0	19
CGATCGC	25	3.8919767E-5	45.0	34
TAATGCG	90	0.0	45.0	1
CGATACA	45	3.8562575E-10	45.0	10
CCGTTCG	20	7.034701E-4	45.0	36
TACCGAA	25	3.8919767E-5	45.0	30
CGTTTAC	95	0.0	42.63158	33
CGTTTTT	5720	0.0	41.892483	1
CACGACG	265	0.0	41.603775	26
CGGTCTA	260	0.0	41.53846	31