##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546279_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2206489 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.275409938594755 31.0 31.0 33.0 30.0 34.0 2 31.509537097171116 31.0 31.0 34.0 30.0 34.0 3 31.59270134589386 31.0 31.0 34.0 30.0 34.0 4 35.36481487104626 37.0 35.0 37.0 33.0 37.0 5 35.09584865367559 37.0 35.0 37.0 32.0 37.0 6 35.24034926074864 37.0 35.0 37.0 32.0 37.0 7 35.76642439640533 37.0 35.0 37.0 35.0 37.0 8 35.83681087918408 37.0 35.0 37.0 35.0 37.0 9 37.578243535317874 39.0 37.0 39.0 35.0 39.0 10 36.874174763617674 39.0 37.0 39.0 32.0 39.0 11 36.556135108763286 39.0 35.0 39.0 32.0 39.0 12 35.678455229099264 37.0 35.0 39.0 31.0 39.0 13 35.19945125491222 37.0 35.0 39.0 30.0 39.0 14 36.16745064217406 38.0 35.0 40.0 30.0 41.0 15 36.454196689854335 38.0 35.0 40.0 31.0 41.0 16 36.610788904907295 38.0 35.0 40.0 31.0 41.0 17 36.541665514761235 38.0 35.0 40.0 31.0 41.0 18 36.50330457119886 38.0 35.0 40.0 31.0 41.0 19 36.46558763719194 38.0 35.0 40.0 31.0 41.0 20 36.37857700627558 38.0 35.0 40.0 31.0 41.0 21 36.24419201727269 38.0 35.0 40.0 31.0 41.0 22 36.144432625768815 37.0 35.0 40.0 30.0 41.0 23 36.091775213925835 37.0 34.0 40.0 30.0 41.0 24 35.9958150709113 37.0 34.0 40.0 30.0 41.0 25 35.88860492846327 37.0 34.0 40.0 30.0 41.0 26 35.83312629249455 37.0 34.0 40.0 30.0 41.0 27 35.75595708838793 37.0 34.0 40.0 30.0 41.0 28 35.75740463695944 37.0 34.0 40.0 30.0 41.0 29 35.80223105576325 37.0 34.0 40.0 30.0 41.0 30 35.716381092314535 37.0 34.0 40.0 30.0 41.0 31 35.62000173125721 37.0 34.0 40.0 30.0 41.0 32 35.44875999835032 37.0 34.0 40.0 29.0 41.0 33 35.27655927584502 37.0 34.0 40.0 29.0 41.0 34 35.13279830536205 37.0 34.0 40.0 27.0 41.0 35 34.9759735942486 36.0 34.0 40.0 27.0 41.0 36 34.83135605933227 36.0 34.0 40.0 26.0 41.0 37 34.74883491374759 36.0 33.0 40.0 26.0 41.0 38 34.76149439222221 36.0 33.0 40.0 26.0 41.0 39 34.69606012085263 36.0 34.0 40.0 26.0 41.0 40 34.54221435049076 36.0 33.0 40.0 25.0 41.0 41 34.49913550441448 36.0 33.0 40.0 25.0 41.0 42 34.446118244867755 36.0 33.0 40.0 25.0 41.0 43 34.4229225706541 35.0 33.0 40.0 25.0 41.0 44 34.21200332292615 35.0 33.0 40.0 24.0 41.0 45 34.196289217847905 35.0 33.0 40.0 24.0 41.0 46 34.1525015533728 35.0 33.0 40.0 24.0 41.0 47 34.10838395296781 35.0 33.0 40.0 24.0 41.0 48 34.05141652643634 35.0 33.0 39.0 24.0 41.0 49 33.982394655037936 35.0 33.0 39.0 24.0 41.0 50 33.91705827674645 35.0 33.0 39.0 24.0 41.0 51 33.848803234459815 35.0 33.0 39.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 2.0 11 3.0 12 6.0 13 11.0 14 17.0 15 65.0 16 209.0 17 476.0 18 1087.0 19 2264.0 20 3893.0 21 6475.0 22 10454.0 23 15097.0 24 20677.0 25 27456.0 26 34585.0 27 40244.0 28 45007.0 29 53246.0 30 64285.0 31 79103.0 32 99501.0 33 130373.0 34 220609.0 35 309218.0 36 158447.0 37 194733.0 38 276882.0 39 411925.0 40 138.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.97800759487131 24.136762068607638 28.769189422652914 13.11604091386814 2 29.682812830700723 26.119323504445298 30.591768189191065 13.606095475662919 3 29.050994589141393 26.0030301533341 30.683497629038715 14.262477628485797 4 26.403122789191336 27.812511188589657 30.704299908134598 15.080066114084412 5 23.78906035788078 32.13983844922861 29.91403990683842 14.157061286052187 6 21.909241333176826 40.45336278585572 26.90745342487545 10.72994245609201 7 87.00986046157493 4.595354882802498 6.496791962253154 1.897992693369421 8 88.56839984246466 4.122748855761348 5.576778311607264 1.732072990166731 9 84.22860934271597 5.199618035711938 7.256868264469027 3.314904357103072 10 51.661576377675125 22.64334877717496 14.390010555230504 11.305064289919416 11 46.07360381130384 21.99911261737539 18.27477952530015 13.652504046020624 12 41.46261322852731 21.96145097482924 22.201968829212383 14.373966967431064 13 23.39064459419467 38.59158146720876 22.32768892117749 15.690085017419076 14 16.610551876759867 40.747540549714955 26.03606906719227 16.605838506332912 15 15.931328005714054 24.66352653468927 44.35653202893828 15.048613430658389 16 17.449350529279776 18.90356126860365 43.77642489946698 19.870663302649593 17 17.622566892470346 20.127496670049112 28.351285685086125 33.89865075239442 18 21.83709050894883 24.20710005805603 32.24321535253518 21.71259408045995 19 28.91018264763613 25.959658081232217 24.387295835148056 20.74286343598359 20 32.367077288851206 23.11772231812622 24.96445710810251 19.55074328492007 21 23.626449078150856 27.592070479390564 27.2358031243301 21.545677318128483 22 23.54786269045529 26.321726507587396 24.877712963898755 25.252697838058562 23 21.96407958525966 30.40459299819759 23.686635192833503 23.94469222370925 24 21.412705887044982 25.3399858326962 34.48369785664012 18.763610423618697 25 19.264587314960554 26.297343879801804 32.9994847017139 21.43858410352374 26 18.51375647012063 33.1383025249616 27.40081641014299 20.947124594774778 27 19.62416309349378 33.28854120732077 27.601678503722432 19.485617195463018 28 17.1562604662883 29.33488451562641 35.36391978387384 18.144935234211456 29 18.17144794286307 25.469059669003563 35.56904203918533 20.790450348948035 30 19.572950510970145 29.74766699494083 30.78365675061149 19.895725743477534 31 27.51176189865438 27.961843453559027 24.579456321785425 19.94693832600117 32 30.068765355277094 26.799000584186004 25.43144334732691 17.70079071320999 33 27.73233857046194 28.204582030547172 24.61512384607401 19.447955552916874 34 21.301579115055638 27.778792461689132 27.5107648395256 23.408863583729627 35 21.081229047595524 25.940306069960013 30.058568159641858 22.91989672280261 36 29.05040541783802 26.367591227511216 25.340982891824975 19.241020462825784 37 22.039357549482457 31.62454016312794 27.743351541748 18.592750745641606 38 21.244701423845758 32.44992383827882 24.1193588547235 22.18601588315192 39 21.73067710738644 31.212210892508413 26.25922902856076 20.797882971544386 40 24.323121483950295 25.82251713015565 25.790112708470335 24.064248677423727 41 18.473058329318658 25.176377493837492 27.864630188503092 28.485933988340754 42 22.22811897090808 26.893222671855604 24.115053372121956 26.76360498511436 43 22.803648692560895 27.724951268735083 25.000215274130078 24.471184764573945 44 21.113678790150324 30.13765307690181 26.88778416751681 21.860883965431054 45 19.536376569291757 34.54710175305655 22.757421405681153 23.159100271970537 46 21.852998134139803 32.581490322408136 25.134501010428785 20.43101053302328 47 21.760996769075213 28.666175086302264 26.641102674883037 22.93172546973948 48 23.088173111218772 24.65690968774374 29.504973738822176 22.74994346221531 49 21.27357081771085 25.079526795737483 30.764576664556227 22.882325721995443 50 19.5654725675043 31.925697340888625 26.38082492140228 22.128005170204794 51 18.881852572117968 32.2895786020234 24.853375656982653 23.975193168875983 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1130.0 1 1774.0 2 2418.0 3 6515.5 4 10613.0 5 8316.0 6 6019.0 7 6601.0 8 7183.0 9 7573.5 10 7964.0 11 8074.0 12 8184.0 13 8196.5 14 8209.0 15 7994.5 16 7780.0 17 7763.0 18 7746.0 19 7688.5 20 7631.0 21 7572.5 22 7514.0 23 8562.0 24 9610.0 25 10292.0 26 14879.5 27 18785.0 28 21573.0 29 24361.0 30 29438.5 31 34516.0 32 39741.0 33 44966.0 34 54234.5 35 63503.0 36 65176.0 37 66849.0 38 79418.5 39 91988.0 40 117700.0 41 143412.0 42 171761.5 43 200111.0 44 201210.0 45 202309.0 46 198233.0 47 194157.0 48 182316.0 49 170475.0 50 164299.5 51 158124.0 52 149968.0 53 141812.0 54 130253.0 55 118694.0 56 110142.5 57 101591.0 58 95250.5 59 88910.0 60 85274.0 61 81638.0 62 69537.5 63 57437.0 64 47445.5 65 37454.0 66 30514.5 67 23575.0 68 19073.0 69 14571.0 70 12204.0 71 9837.0 72 8302.0 73 6767.0 74 4996.0 75 2770.0 76 2315.0 77 1688.0 78 1061.0 79 873.5 80 686.0 81 443.0 82 200.0 83 169.0 84 138.0 85 81.5 86 25.0 87 16.5 88 8.0 89 7.0 90 6.0 91 4.5 92 3.0 93 2.5 94 2.0 95 1.5 96 1.0 97 1.5 98 2.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2206489.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 16.366003715591777 #Duplication Level Percentage of deduplicated Percentage of total 1 81.55248727525512 13.346883097625767 2 7.51236844826889 2.4589489987452624 3 2.3171398547513955 1.137669584172214 4 1.107180530319 0.7248048269212654 5 0.6320427131125947 0.5172006695606718 6 0.4257405913822577 0.41806032602641635 7 0.305002888378638 0.349417488312971 8 0.24423223416899725 0.31976845215016725 9 0.1916873130075383 0.2823439749221859 >10 2.5390370508048687 10.117485265607549 >50 1.2900560975735915 15.426309571866812 >100 1.8717998166703216 53.28435520928074 >500 0.010102667676126196 0.9815702282233133 >1k 5.612593153403443E-4 0.10195984964700336 >5k 5.612593153403443E-4 0.5332224569377068 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 6360 0.2882407299560524 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5250 0.23793456482221303 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.029911773863363925 0.0 2 0.0 0.0 0.0 0.09345163288826729 0.0 3 0.0 0.0 0.0 0.13061474587002248 0.0 4 0.0 0.0 0.0 0.21169378138753467 0.0 5 0.0 0.0 0.0 0.36474235765508006 0.0 6 0.0 0.0 0.0 0.4963541626538813 0.0 7 0.0 0.0 0.0 0.582101247728858 0.0 8 0.0 0.0 0.0 0.7804706934863487 0.0 9 0.0 0.0 0.0 0.8486786020687164 0.0 10 0.0 0.0 0.0 1.0146436261408962 0.0 11 0.0 0.0 0.0 1.1585373867714728 0.0 12 0.0 0.0 0.0 1.3259526786673308 0.0 13 0.0 0.0 0.0 1.3808362516196546 0.0 14 0.0 0.0 0.0 1.402907515061258 0.0 15 0.0 0.0 0.0 1.4403425532599528 0.0 16 4.532086948994534E-5 0.0 0.0 1.5201526044317466 0.0 17 4.532086948994534E-5 0.0 0.0 1.6072139947219315 0.0 18 4.532086948994534E-5 0.0 0.0 1.729625663214274 0.0 19 4.532086948994534E-5 0.0 0.0 1.8028188674405357 0.0 20 4.532086948994534E-5 0.0 0.0 1.8682168821145266 0.0 21 4.532086948994534E-5 0.0 0.0 1.9507008645862272 0.0 22 4.532086948994534E-5 0.0 0.0 2.0432460800846957 0.0 23 4.532086948994534E-5 0.0 0.0 2.1453993199150325 0.0 24 4.532086948994534E-5 0.0 0.0 2.224574878913967 0.0 25 4.532086948994534E-5 0.0 0.0 2.2885679466337696 0.0 26 4.532086948994534E-5 0.0 0.0 2.3550083413060294 0.0 27 4.532086948994534E-5 0.0 0.0 2.4247571594510555 0.0 28 4.532086948994534E-5 0.0 0.0 2.4942793732486317 0.0 29 4.532086948994534E-5 0.0 0.0 2.5723219105103174 0.0 30 9.064173897989068E-5 0.0 0.0 2.6651843720952155 0.0 31 9.064173897989068E-5 0.0 0.0 2.76099269019696 0.0 32 9.064173897989068E-5 0.0 0.0 2.8492777439633734 0.0 33 9.064173897989068E-5 0.0 0.0 2.9362938133840686 0.0 34 9.064173897989068E-5 0.0 0.0 3.022901994979354 0.0 35 9.064173897989068E-5 0.0 0.0 3.135660318270338 0.0 36 9.064173897989068E-5 0.0 0.0 3.2420283989632397 0.0 37 9.064173897989068E-5 0.0 0.0 3.347263457918893 0.0 38 1.35962608469836E-4 0.0 0.0 3.453087688177915 0.0 39 1.35962608469836E-4 0.0 0.0 3.557960180177649 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGAACTA 25 3.8919767E-5 45.0 10 GTCGATA 20 7.034701E-4 45.0 44 ACGTTGA 25 3.8919767E-5 45.0 14 CGTCTAG 35 1.2126111E-7 45.0 18 CATTACG 20 7.034701E-4 45.0 39 CTACGAT 20 7.034701E-4 45.0 41 TTAACGC 25 3.8919767E-5 45.0 28 ACTCGAC 25 3.8919767E-5 45.0 35 TCCAACG 25 3.8919767E-5 45.0 27 CGACTCA 20 7.034701E-4 45.0 20 CCCGGTA 20 7.034701E-4 45.0 19 CGATCGC 25 3.8919767E-5 45.0 34 TAATGCG 90 0.0 45.0 1 CGATACA 45 3.8562575E-10 45.0 10 CCGTTCG 20 7.034701E-4 45.0 36 TACCGAA 25 3.8919767E-5 45.0 30 CGTTTAC 95 0.0 42.63158 33 CGTTTTT 5720 0.0 41.892483 1 CACGACG 265 0.0 41.603775 26 CGGTCTA 260 0.0 41.53846 31 >>END_MODULE