SRR1546278_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546278_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1712045
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	8952	0.5228834522457062	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4078	0.23819467362131255	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	3494	0.20408342070447916	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2524	0.14742603144193056	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2279	0.13311565992716312	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	1988	0.11611844314839855	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAACCG	20	7.034255E-4	45.000004	42
GCACGAC	35	1.2123928E-7	45.000004	12
GTTAGCG	70	0.0	45.000004	1
CAATTCG	20	7.034255E-4	45.000004	1
CACTCGA	20	7.034255E-4	45.000004	38
TACGCAC	35	1.2123928E-7	45.000004	1
CGTAGGT	20	7.034255E-4	45.000004	3
AACGCGT	35	1.2123928E-7	45.000004	33
CCGAACG	20	7.034255E-4	45.000004	1
ATACCCG	40	6.8175723E-9	45.000004	19
TGTCCGA	20	7.034255E-4	45.000004	45
GACGTAT	25	3.8916092E-5	45.0	24
TCTTACG	50	2.1827873E-11	45.0	1
CGTAATC	25	3.8916092E-5	45.0	31
TGTACGA	25	3.8916092E-5	45.0	21
CTTAGTA	25	3.8916092E-5	45.0	30
CTATGCG	60	0.0	44.999996	1
ACGCATG	65	0.0	44.999996	1
AATCTCG	30	2.1661272E-6	44.999996	18
TCGAATA	30	2.1661272E-6	44.999996	39