##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546278_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1712045 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.234306925343667 31.0 31.0 33.0 30.0 34.0 2 31.46770324378156 31.0 31.0 34.0 30.0 34.0 3 31.549515929779883 31.0 31.0 34.0 30.0 34.0 4 35.32710296750378 37.0 35.0 37.0 33.0 37.0 5 35.03248921611289 37.0 35.0 37.0 32.0 37.0 6 35.181345700609505 37.0 35.0 37.0 32.0 37.0 7 35.70089629653426 37.0 35.0 37.0 35.0 37.0 8 35.77757418759437 37.0 35.0 37.0 35.0 37.0 9 37.47687882035811 39.0 37.0 39.0 35.0 39.0 10 36.834812169072656 39.0 37.0 39.0 32.0 39.0 11 36.507038658446476 39.0 35.0 39.0 32.0 39.0 12 35.497442532176436 37.0 35.0 39.0 31.0 39.0 13 34.94180468387221 37.0 34.0 39.0 29.0 39.0 14 35.880764232248566 38.0 34.0 40.0 29.0 41.0 15 36.20174878580878 38.0 35.0 40.0 30.0 41.0 16 36.373373363433785 38.0 35.0 40.0 31.0 41.0 17 36.326484993093054 37.0 35.0 40.0 31.0 41.0 18 36.296571059756026 37.0 35.0 40.0 31.0 41.0 19 36.237558008113105 37.0 35.0 40.0 31.0 41.0 20 36.16882032890491 37.0 35.0 40.0 31.0 41.0 21 35.985293026760395 37.0 34.0 40.0 30.0 41.0 22 35.857848362630655 37.0 34.0 40.0 30.0 41.0 23 35.85674033100766 36.0 34.0 40.0 30.0 41.0 24 35.74349213951736 36.0 34.0 40.0 30.0 41.0 25 35.59235066835276 36.0 34.0 40.0 30.0 41.0 26 35.50607665102261 36.0 34.0 40.0 30.0 41.0 27 35.440121608953035 36.0 34.0 40.0 29.0 41.0 28 35.45212304583116 36.0 34.0 40.0 29.0 41.0 29 35.50650187349048 36.0 34.0 40.0 30.0 41.0 30 35.42168225718366 36.0 34.0 40.0 29.0 41.0 31 35.31322716400562 36.0 34.0 40.0 29.0 41.0 32 35.136266862144396 36.0 34.0 40.0 29.0 41.0 33 34.96775201586407 36.0 34.0 40.0 27.0 41.0 34 34.84511037969212 36.0 34.0 40.0 27.0 41.0 35 34.71157300187787 35.0 33.0 40.0 27.0 41.0 36 34.52733602212559 35.0 33.0 40.0 25.0 41.0 37 34.43452946622314 35.0 33.0 40.0 25.0 41.0 38 34.413221030989256 35.0 33.0 40.0 25.0 41.0 39 34.36133512845749 35.0 33.0 40.0 25.0 41.0 40 34.190500833798176 35.0 33.0 40.0 24.0 41.0 41 34.177309007648745 35.0 33.0 40.0 24.0 41.0 42 34.1262922411502 35.0 33.0 40.0 24.0 41.0 43 34.058574979045524 35.0 33.0 40.0 24.0 41.0 44 33.82684917744569 35.0 33.0 39.0 23.0 41.0 45 33.80912183967127 35.0 33.0 39.0 23.0 41.0 46 33.75559462514128 35.0 33.0 39.0 23.0 41.0 47 33.751856405643544 35.0 33.0 39.0 23.0 41.0 48 33.68197097623018 35.0 33.0 39.0 23.0 41.0 49 33.59610816304478 35.0 33.0 39.0 24.0 41.0 50 33.510952691079964 35.0 32.0 39.0 24.0 41.0 51 33.429750386234005 35.0 32.0 39.0 24.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 2.0 11 1.0 12 5.0 13 11.0 14 25.0 15 54.0 16 171.0 17 528.0 18 1157.0 19 2178.0 20 3711.0 21 5781.0 22 8530.0 23 11945.0 24 16824.0 25 22534.0 26 28817.0 27 33801.0 28 38440.0 29 44839.0 30 53782.0 31 65369.0 32 81369.0 33 105335.0 34 182320.0 35 258799.0 36 119753.0 37 143609.0 38 196997.0 39 285180.0 40 178.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.65749439997197 25.454120656875258 28.77377639022339 13.114608552929392 2 29.956513993499 26.659462806176236 30.53646370276482 12.847559497559935 3 30.349435908518757 25.23613573241358 30.98201273915113 13.432415619916533 4 27.49986127701083 28.57781191499055 28.99450656962872 14.927820238369902 5 23.684132134377307 33.411972232038295 28.91039663092968 13.993499002654719 6 22.072842711494147 41.91957571208701 25.445359204927442 10.562222371491403 7 85.85831564006787 6.120341462987247 6.09224640707458 1.9290964898703011 8 87.5103750193482 4.903375787435494 5.526431840284572 2.0598173529317276 9 82.68211407994532 6.628622495319925 7.636423108037464 3.052840316697283 10 52.94673913360922 23.329176511131426 12.43641376248872 11.287670592770633 11 48.8196279887503 20.663008273731123 17.190961686170635 13.32640205134795 12 42.88479566833816 21.525251964755597 22.284052113116186 13.30590025379006 13 22.75717051829829 41.28705729113429 21.768294641788035 14.187477548779384 14 16.09770771212205 44.23721339100315 25.409495661621044 14.255583235253747 15 15.946485051502734 22.67498809902777 46.240665403070594 15.137861446398897 16 17.2730856957615 18.40115183888274 44.78930168307492 19.53646078228084 17 17.27962757988254 19.274493369041117 27.14566497960042 36.30021407147592 18 21.97967927244903 23.951882105902587 32.94451956578244 21.12391905586594 19 30.982888884345915 24.236629294206637 23.84838015355905 20.932101667888404 20 32.50434421992413 23.63541846154745 23.02094863160723 20.839288686921197 21 22.995014733841693 28.679094299507312 26.06713024482417 22.25876072182682 22 22.930004760388893 25.62590352473212 23.98202150060308 27.462070214275908 23 21.739206621321287 30.750418359330506 23.32485419483717 24.185520824511038 24 22.05958371421312 24.33154502364132 36.39997780432173 17.20889345782383 25 19.2587811652147 25.032285950427706 33.88783589216405 21.821096992193546 26 17.86214731505305 34.76310494175095 26.12244421145472 21.25230353174128 27 20.170264216185906 33.13855652158676 27.0150609358983 19.67611832632904 28 16.394195246036173 29.634326200537952 35.88059893285515 18.09087962057072 29 17.52500664410106 25.623099860108816 35.324188324489135 21.527705171300987 30 19.086823068318882 31.227742261447567 29.90826759810636 19.777167072127195 31 30.170176601666427 27.071951963879453 23.3631125350093 19.394758899444817 32 31.69799859232672 26.74526662558519 24.264023433963477 17.292711348124612 33 29.21272513280901 27.68046400649516 23.368486225537296 19.738324635158538 34 20.149470370229754 28.615836616444078 27.43158036149751 23.803112651828663 35 22.368395690533834 25.970520634679577 29.809496829814634 21.851586844971948 36 31.248127239646156 25.974317263856967 23.87390518356702 18.90365031292986 37 22.00345201206744 33.720433750281096 26.072270296633558 18.203843941017904 38 21.956373810267838 34.18741913909973 22.04282013615296 21.81338691447947 39 22.873989877602515 32.131223186306435 24.64643160664585 20.348355329445194 40 24.149657281204643 26.720851379490608 25.04186513789065 24.087626201414096 41 18.119617182959562 25.656685425908783 25.367382282591873 30.85631510853979 42 22.3646574710361 27.04724466938661 22.802087561950763 27.78601029762652 43 23.36141865429939 26.254975774585365 24.756592262469738 25.62701330864551 44 21.101723377598137 30.326831362493394 27.562534863277545 21.00891039663093 45 18.590749659033495 37.031912128477934 21.758072947848916 22.619265264639658 46 21.636522404492872 33.770666074781914 24.468924590183086 20.123886930542128 47 23.461649664582414 27.280124062159583 25.98851081601243 23.269715457245574 48 23.836990266026888 24.40683510071289 29.853187270194415 21.902987363065808 49 21.899833240364593 24.50946090786165 30.833243285077206 22.757462566696553 50 20.101866481313284 33.43165629408105 25.117564082719788 21.348913141885873 51 20.647880166701228 33.47119964720554 22.622653026059478 23.25826716003376 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1214.0 1 1780.0 2 2346.0 3 5232.0 4 8118.0 5 6499.0 6 4880.0 7 5412.0 8 5944.0 9 6171.0 10 6398.0 11 6484.5 12 6571.0 13 6367.0 14 6163.0 15 6101.5 16 6040.0 17 5819.0 18 5598.0 19 5687.0 20 5776.0 21 6307.5 22 6839.0 23 6973.5 24 7108.0 25 9128.5 26 11393.0 27 11637.0 28 16669.0 29 21701.0 30 25030.5 31 28360.0 32 30619.5 33 32879.0 34 34710.5 35 36542.0 36 39244.0 37 41946.0 38 54029.0 39 66112.0 40 89686.0 41 113260.0 42 138506.0 43 163752.0 44 162757.0 45 161762.0 46 158930.0 47 156098.0 48 146545.5 49 136993.0 50 129012.0 51 121031.0 52 113217.0 53 105403.0 54 96098.0 55 86793.0 56 81564.5 57 76336.0 58 71143.0 59 65950.0 60 61475.5 61 57001.0 62 51283.5 63 45566.0 64 38994.0 65 32422.0 66 27874.0 67 23326.0 68 19186.0 69 15046.0 70 13042.5 71 11039.0 72 9137.5 73 7236.0 74 6078.0 75 3714.5 76 2509.0 77 1834.5 78 1160.0 79 970.0 80 780.0 81 499.5 82 219.0 83 159.5 84 100.0 85 56.0 86 12.0 87 6.5 88 1.0 89 2.5 90 4.0 91 3.0 92 2.0 93 2.0 94 2.0 95 1.0 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1712045.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 17.00508345203112 #Duplication Level Percentage of deduplicated Percentage of total 1 81.60518542428655 13.877029882584663 2 7.30218905403353 2.483486684926967 3 2.3026800847575846 1.1747180101389845 4 1.0839976233043636 0.7373388018437638 5 0.6492032248830952 0.551987750823238 6 0.4103780205089969 0.41871074913808987 7 0.30060639973815845 0.35782858396334066 8 0.23907653597695352 0.32524131565684916 9 0.18637680605715448 0.28524178264724376 >10 2.7058084450228654 11.580814065677886 >50 1.436709550569009 17.88141600245674 >100 1.7666515476613953 47.87861098168907 >500 0.007656882200266087 0.7849641488829548 >1k 0.0031323609001088536 1.1327915109416993 >5k 3.480401000120949E-4 0.5298197286285314 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 8952 0.5228834522457062 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4078 0.23819467362131255 No Hit AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 3494 0.20408342070447916 No Hit AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 2524 0.14742603144193056 No Hit AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 2279 0.13311565992716312 No Hit GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA 1988 0.11611844314839855 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.033936023877877045 0.0 2 0.0 0.0 0.0 0.10887564287153667 0.0 3 0.0 0.0 0.0 0.1609186674415684 0.0 4 0.0 0.0 0.0 0.2533227806512095 0.0 5 0.0 0.0 0.0 0.40781638333104564 0.0 6 5.840967965211195E-5 0.0 0.0 0.5676252668592239 0.0 7 5.840967965211195E-5 0.0 0.0 0.6606134768653862 0.0 8 5.840967965211195E-5 0.0 0.0 0.8916237598894888 0.0 9 5.840967965211195E-5 0.0 0.0 0.9814578471944371 0.0 10 5.840967965211195E-5 0.0 0.0 1.1389303435365308 0.0 11 5.840967965211195E-5 0.0 0.0 1.3234465215575526 0.0 12 5.840967965211195E-5 0.0 0.0 1.4853581535532068 0.0 13 5.840967965211195E-5 0.0 0.0 1.547097184945489 0.0 14 5.840967965211195E-5 0.0 0.0 1.5764188441308493 0.0 15 5.840967965211195E-5 0.0 0.0 1.6170719811687193 0.0 16 5.840967965211195E-5 0.0 0.0 1.7142072784301814 0.0 17 5.840967965211195E-5 0.0 0.0 1.8189358340464181 0.0 18 5.840967965211195E-5 0.0 0.0 1.974247172241384 0.0 19 5.840967965211195E-5 0.0 0.0 2.0409510264040955 0.0 20 1.168193593042239E-4 0.0 0.0 2.1098744483935876 0.0 21 1.168193593042239E-4 0.0 0.0 2.201227187369491 0.0 22 1.168193593042239E-4 0.0 0.0 2.288374429410442 0.0 23 1.168193593042239E-4 0.0 0.0 2.3940375399011122 0.0 24 1.168193593042239E-4 0.0 0.0 2.4745260784617225 0.0 25 1.168193593042239E-4 0.0 0.0 2.5365571582522657 0.0 26 1.168193593042239E-4 0.0 0.0 2.599814841315503 0.0 27 1.168193593042239E-4 0.0 0.0 2.66196274046535 0.0 28 1.168193593042239E-4 0.0 0.0 2.7296011495024954 0.0 29 1.168193593042239E-4 0.0 0.0 2.7993423070071173 0.0 30 1.168193593042239E-4 0.0 0.0 2.892505746052236 0.0 31 1.168193593042239E-4 0.0 0.0 2.9815220978420545 0.0 32 1.168193593042239E-4 0.0 0.0 3.058038778186321 0.0 33 1.168193593042239E-4 0.0 0.0 3.1344386391712833 0.0 34 1.7522903895633585E-4 0.0 0.0 3.2200672295412796 0.0 35 1.7522903895633585E-4 0.0 0.0 3.324737375477864 0.0 36 2.336387186084478E-4 0.0 0.0 3.412877582072901 0.0 37 2.336387186084478E-4 0.0 0.0 3.506566708234889 0.0 38 2.336387186084478E-4 0.0 0.0 3.5936555405961874 0.0 39 2.336387186084478E-4 0.0 0.0 3.683664856940092 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGAACCG 20 7.034255E-4 45.000004 42 GCACGAC 35 1.2123928E-7 45.000004 12 GTTAGCG 70 0.0 45.000004 1 CAATTCG 20 7.034255E-4 45.000004 1 CACTCGA 20 7.034255E-4 45.000004 38 TACGCAC 35 1.2123928E-7 45.000004 1 CGTAGGT 20 7.034255E-4 45.000004 3 AACGCGT 35 1.2123928E-7 45.000004 33 CCGAACG 20 7.034255E-4 45.000004 1 ATACCCG 40 6.8175723E-9 45.000004 19 TGTCCGA 20 7.034255E-4 45.000004 45 GACGTAT 25 3.8916092E-5 45.0 24 TCTTACG 50 2.1827873E-11 45.0 1 CGTAATC 25 3.8916092E-5 45.0 31 TGTACGA 25 3.8916092E-5 45.0 21 CTTAGTA 25 3.8916092E-5 45.0 30 CTATGCG 60 0.0 44.999996 1 ACGCATG 65 0.0 44.999996 1 AATCTCG 30 2.1661272E-6 44.999996 18 TCGAATA 30 2.1661272E-6 44.999996 39 >>END_MODULE