SRR1546276_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546276_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2688033
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7003	0.26052507539899994	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	6049	0.22503443968135808	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCGAAA	30	2.166591E-6	45.000004	26
TATCCGC	30	2.166591E-6	45.000004	10
TGTTACG	45	3.8562575E-10	45.0	1
CGAATGT	25	3.892205E-5	45.0	37
CGAATCG	20	7.034975E-4	45.0	33
GCGTAAT	20	7.034975E-4	45.0	37
CGGTCTA	280	0.0	42.589283	31
CGTTTTT	6960	0.0	42.510777	1
GTGCGTA	65	0.0	41.538464	27
ACGGGTC	240	0.0	41.250004	5
CGAAATC	85	0.0	39.705883	40
GTCGAAT	40	3.4605364E-7	39.375	38
CGACGGT	310	0.0	39.193546	28
TATTCCG	35	6.251412E-6	38.571426	1
GTCGTTA	35	6.251412E-6	38.571426	29
CGTAACG	35	6.251412E-6	38.571426	26
CACGACG	330	0.0	38.18182	26
GGGCGAT	3940	0.0	37.97589	7
ACAACGA	380	0.0	37.894737	13
AGGGCGA	1895	0.0	37.875988	6