##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546276_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2688033 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.167001297975137 31.0 31.0 33.0 30.0 34.0 2 31.40616726059539 31.0 31.0 34.0 30.0 34.0 3 31.490005517045365 31.0 31.0 34.0 30.0 34.0 4 35.2779441323823 37.0 35.0 37.0 33.0 37.0 5 34.994834884839584 37.0 35.0 37.0 32.0 37.0 6 35.13444961427185 37.0 35.0 37.0 32.0 37.0 7 35.69095059472856 37.0 35.0 37.0 35.0 37.0 8 35.752511594909734 37.0 35.0 37.0 35.0 37.0 9 37.457364548723916 39.0 37.0 39.0 35.0 39.0 10 36.73339836229689 39.0 37.0 39.0 32.0 39.0 11 36.43821857841775 38.0 35.0 39.0 32.0 39.0 12 35.75760639843335 37.0 35.0 39.0 31.0 39.0 13 35.349046310071344 37.0 35.0 39.0 30.0 39.0 14 36.28898901166764 38.0 35.0 40.0 30.0 41.0 15 36.53139116967686 38.0 35.0 40.0 31.0 41.0 16 36.656852427034934 38.0 35.0 40.0 31.0 41.0 17 36.59756111625118 38.0 35.0 40.0 31.0 41.0 18 36.556867791429646 38.0 35.0 40.0 31.0 41.0 19 36.51066448961006 38.0 35.0 40.0 31.0 41.0 20 36.44316755039838 38.0 35.0 40.0 31.0 41.0 21 36.29988061902514 38.0 35.0 40.0 30.0 41.0 22 36.200171277659166 38.0 35.0 40.0 30.0 41.0 23 36.15248994338983 38.0 34.0 40.0 30.0 41.0 24 36.04955891538534 38.0 34.0 40.0 30.0 41.0 25 35.91614277056866 37.0 34.0 40.0 30.0 41.0 26 35.8850653991227 37.0 34.0 40.0 30.0 41.0 27 35.79508659305894 37.0 34.0 40.0 30.0 41.0 28 35.766386052552186 37.0 34.0 40.0 29.0 41.0 29 35.763827676222725 37.0 34.0 40.0 30.0 41.0 30 35.652339833625554 37.0 34.0 40.0 29.0 41.0 31 35.55611891669485 37.0 34.0 40.0 29.0 41.0 32 35.406709292631454 37.0 34.0 40.0 29.0 41.0 33 35.24187872693527 37.0 34.0 40.0 27.0 41.0 34 35.09741658677554 37.0 34.0 40.0 27.0 41.0 35 34.95240311409867 37.0 34.0 40.0 26.0 41.0 36 34.80800384519089 37.0 33.0 40.0 25.0 41.0 37 34.72567970705717 37.0 33.0 40.0 25.0 41.0 38 34.67526365933752 37.0 33.0 40.0 25.0 41.0 39 34.61148096024119 36.0 33.0 40.0 25.0 41.0 40 34.47373525548235 36.0 33.0 40.0 24.0 41.0 41 34.38458084405958 36.0 33.0 40.0 24.0 41.0 42 34.33032406968218 36.0 33.0 40.0 24.0 41.0 43 34.284032599302165 36.0 33.0 40.0 24.0 41.0 44 34.06965241870171 36.0 33.0 40.0 23.0 41.0 45 34.07649310852955 35.0 33.0 40.0 23.0 41.0 46 34.01889448529836 35.0 33.0 40.0 23.0 41.0 47 33.98809947645732 35.0 33.0 40.0 23.0 41.0 48 33.874591941393575 35.0 33.0 40.0 23.0 41.0 49 33.797012164657204 35.0 33.0 39.0 24.0 41.0 50 33.71819021567072 35.0 33.0 39.0 24.0 41.0 51 33.64256763216821 35.0 32.0 39.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 3.0 11 2.0 12 10.0 13 10.0 14 25.0 15 131.0 16 318.0 17 845.0 18 1760.0 19 3441.0 20 5844.0 21 9010.0 22 13447.0 23 18937.0 24 25931.0 25 34873.0 26 44666.0 27 51994.0 28 59189.0 29 68612.0 30 82173.0 31 99614.0 32 122608.0 33 156840.0 34 247196.0 35 331600.0 36 204050.0 37 253964.0 38 350326.0 39 500441.0 40 172.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 35.11783523490969 24.361084852752924 27.47615077642276 13.044929135914627 2 30.339806096130516 26.274603027567 29.864179494820192 13.521411381482295 3 29.35975860415404 25.704595144479253 30.631841201354298 14.303805050012407 4 26.78642710115538 28.267547310617097 29.426684865848003 15.519340722379523 5 23.83181307669958 31.83707194070906 29.12683735653543 15.204277626055932 6 22.2815716920142 40.77903805496435 26.18293748625854 10.756452766762909 7 86.13711215598916 5.031002223559011 6.727856391644002 2.104029228807831 8 86.96541299902196 4.373086193510273 6.208889548603012 2.4526112588647537 9 82.64879932649636 5.835419431234661 8.169616965267911 3.346164277001064 10 46.671897257213736 25.602885083628063 15.134300806574918 12.590916852583284 11 40.38001021564839 23.544279404307908 21.633030546872007 14.44267983317169 12 36.401041207455414 22.819362708716746 25.52148727340773 15.25810881042011 13 23.46968954622209 35.18963494867808 25.24001751466593 16.1006579904339 14 18.328718434632314 37.60102647549342 28.02666485121276 16.043590238661505 15 16.71229482673762 24.829419876913715 42.105956288483064 16.352329007865603 16 19.3626343128972 21.7604099354435 39.76033776371049 19.116617987948807 17 19.777807787329994 21.1702014074976 28.29801568656337 30.753975118609034 18 23.193502460721277 23.70785626515746 32.63382555199285 20.464815722128414 19 28.54808702125309 24.819672972764845 25.937107170931313 20.69513283505076 20 30.143193926562656 24.68031456459054 25.358952066436686 19.81753944241012 21 23.942302791669594 27.25085592327178 28.74350872924551 20.06333255581312 22 23.912429646511036 24.03549361187158 27.096095918465284 24.955980823152096 23 21.065366385010897 28.743731940790905 26.367161415057033 23.823740259141164 24 20.761687077502398 25.958423873516434 34.21390287991256 19.06598616906861 25 20.36079914197482 25.8942877561399 32.58055239649216 21.164360705393126 26 19.608687839769825 31.509322988222245 26.88493779652259 21.997051375485345 27 19.696037957867333 31.654596502349484 28.278335868644472 20.37102967113871 28 18.119643620446624 28.78755580753659 33.35100424734369 19.741796324673096 29 18.44129145735934 25.993840105385612 33.46398649123727 22.100881946017775 30 21.08742712608067 28.255047464075034 30.850439708143462 19.807085701700835 31 26.87280996922285 26.86536958437638 25.8412378121846 20.42058263421617 32 28.148054729982853 26.23118838198787 26.422592282163205 19.198164605866076 33 27.123178919306422 27.14739737198167 25.423162587661686 20.306261121050227 34 21.46216210887292 27.43083883270778 28.178671913626058 22.928327144793236 35 20.886536735226095 26.66261909731019 29.19123388738159 23.25961028008213 36 28.089610507013862 26.663325933870603 25.71940151032372 19.52766204879181 37 21.948354056665227 30.881354507180532 27.4956445847205 19.674646851433746 38 22.024766809038432 31.67959619543361 24.360675631586368 21.93496136394159 39 21.330132479772384 30.263095728363453 26.431855561297052 21.97491623056711 40 23.648035570991873 26.314929913434842 26.41105968565118 23.625974829922104 41 19.87635568462143 25.4595460695609 27.03962339748061 27.624474848337055 42 22.389717685757578 26.764998792797556 25.508913023017204 25.336370498427662 43 22.220523334348947 26.687916405788176 27.175633632474007 23.915926627388874 44 21.201823043095082 29.146777587923957 27.819710546708322 21.831688822272643 45 19.66359787993674 32.295660060720984 25.03477449867617 23.005967560666107 46 22.239607921480133 30.17105816781267 26.49353635167425 21.095797559032945 47 22.059773819741054 27.858214538288777 27.016707012153496 23.065304629816673 48 22.49890533337946 26.641451202421994 28.933312946678853 21.926330517519688 49 22.407686215161792 25.259771736433294 29.588066813167845 22.744475235237065 50 21.02637876841542 30.784927119570334 26.837319333505206 21.351374778509044 51 20.234535811130293 31.448535044026617 25.095413635174868 23.221515509668222 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1419.0 1 2292.0 2 3165.0 3 8714.5 4 14264.0 5 11314.5 6 8365.0 7 8758.0 8 9151.0 9 9746.0 10 10341.0 11 10348.0 12 10355.0 13 10294.5 14 10234.0 15 10049.5 16 9865.0 17 9874.0 18 9883.0 19 10444.0 20 11005.0 21 11730.0 22 12455.0 23 12510.0 24 12565.0 25 14036.0 26 21258.5 27 27010.0 28 29458.0 29 31906.0 30 39096.5 31 46287.0 32 52194.5 33 58102.0 34 66633.0 35 75164.0 36 84116.5 37 93069.0 38 103903.0 39 114737.0 40 140614.0 41 166491.0 42 193201.0 43 219911.0 44 223793.0 45 227675.0 46 227511.0 47 227347.0 48 225240.5 49 223134.0 50 208734.5 51 194335.0 52 179359.0 53 164383.0 54 151703.0 55 139023.0 56 133350.0 57 127677.0 58 117436.5 59 107196.0 60 97794.5 61 88393.0 62 76818.5 63 65244.0 64 58232.0 65 51220.0 66 42489.0 67 33758.0 68 29489.0 69 25220.0 70 20748.0 71 16276.0 72 14229.5 73 12183.0 74 9394.0 75 4827.5 76 3050.0 77 2507.5 78 1965.0 79 1628.5 80 1292.0 81 905.0 82 518.0 83 371.0 84 224.0 85 133.5 86 43.0 87 28.0 88 13.0 89 8.5 90 4.0 91 2.5 92 1.0 93 1.5 94 2.0 95 1.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2688033.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 17.98908835507173 #Duplication Level Percentage of deduplicated Percentage of total 1 81.18906437772347 14.605172525564742 2 7.286396787447111 2.6215127119899373 3 2.3495540367948147 1.267990054887521 4 1.2832397769229886 0.923372549112407 5 0.7598271661062407 0.6834299012834465 6 0.5150554364013901 0.5559226651910779 7 0.38642757855120574 0.48660358973758433 8 0.29500174509711147 0.42454499659618294 9 0.23093836739633464 0.3738933626101812 >10 2.7393390063496876 11.864731846038442 >50 1.2939782742530836 17.069544115302993 >100 1.6636222057443177 47.64052058731734 >500 0.005666430909213067 0.6507914893626543 >1k 0.0014690746801663507 0.33921345468867903 >5k 4.1973562290467166E-4 0.49275615031682124 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7003 0.26052507539899994 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 6049 0.22503443968135808 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.04363785712452191 0.0 2 0.0 0.0 0.0 0.12719337895033284 0.0 3 0.0 0.0 0.0 0.182847457601897 0.0 4 0.0 0.0 0.0 0.29352318219307577 0.0 5 0.0 0.0 0.0 0.4824717553690747 0.0 6 0.0 0.0 0.0 0.6730200112870638 0.0 7 0.0 0.0 0.0 0.788048361013425 0.0 8 0.0 0.0 0.0 1.0820551682215211 0.0 9 0.0 0.0 0.0 1.195893056372448 0.0 10 0.0 0.0 0.0 1.4040006205280962 0.0 11 0.0 0.0 0.0 1.5952185110822672 0.0 12 0.0 0.0 0.0 1.7800376706684777 0.0 13 7.440384846465799E-5 0.0 0.0 1.8503493074675794 0.0 14 7.440384846465799E-5 0.0 0.0 1.8769486832936946 0.0 15 7.440384846465799E-5 0.0 0.0 1.9252367809472577 0.0 16 7.440384846465799E-5 0.0 0.0 2.0225942166632627 0.0 17 7.440384846465799E-5 0.0 0.0 2.135613662481078 0.0 18 7.440384846465799E-5 0.0 0.0 2.3013110330118716 0.0 19 7.440384846465799E-5 0.0 0.0 2.3743384102799334 0.0 20 1.1160577269698697E-4 0.0 0.0 2.4570382878484005 0.0 21 1.1160577269698697E-4 0.0 0.0 2.558153117911871 0.0 22 1.1160577269698697E-4 0.0 0.0 2.663583371186291 0.0 23 1.4880769692931597E-4 0.0 0.0 2.785903298062189 0.0 24 1.4880769692931597E-4 0.0 0.0 2.8737370411747176 0.0 25 1.4880769692931597E-4 0.0 0.0 2.954688428304266 0.0 26 1.4880769692931597E-4 0.0 0.0 3.0344121519341467 0.0 27 1.4880769692931597E-4 0.0 0.0 3.115177529442533 0.0 28 1.8600962116164496E-4 0.0 0.0 3.200332734010334 0.0 29 1.8600962116164496E-4 0.0 0.0 3.303679679527744 0.0 30 1.8600962116164496E-4 0.0 0.0 3.428566539175672 0.0 31 2.2321154539397395E-4 0.0 0.0 3.5386470329791337 0.0 32 2.6041346962630294E-4 0.0 0.0 3.644412103571645 0.0 33 2.6041346962630294E-4 0.0 0.0 3.752186078072702 0.0 34 2.6041346962630294E-4 0.0 0.0 3.864982312345124 0.0 35 2.6041346962630294E-4 0.0 0.0 4.008656143730378 0.0 36 2.6041346962630294E-4 0.0 0.0 4.126288628153002 0.0 37 2.6041346962630294E-4 0.0 0.0 4.249947824301264 0.0 38 2.6041346962630294E-4 0.0 0.0 4.387780953582043 0.0 39 2.6041346962630294E-4 0.0 0.0 4.5793708633785375 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGCGAAA 30 2.166591E-6 45.000004 26 TATCCGC 30 2.166591E-6 45.000004 10 TGTTACG 45 3.8562575E-10 45.0 1 CGAATGT 25 3.892205E-5 45.0 37 CGAATCG 20 7.034975E-4 45.0 33 GCGTAAT 20 7.034975E-4 45.0 37 CGGTCTA 280 0.0 42.589283 31 CGTTTTT 6960 0.0 42.510777 1 GTGCGTA 65 0.0 41.538464 27 ACGGGTC 240 0.0 41.250004 5 CGAAATC 85 0.0 39.705883 40 GTCGAAT 40 3.4605364E-7 39.375 38 CGACGGT 310 0.0 39.193546 28 TATTCCG 35 6.251412E-6 38.571426 1 GTCGTTA 35 6.251412E-6 38.571426 29 CGTAACG 35 6.251412E-6 38.571426 26 CACGACG 330 0.0 38.18182 26 GGGCGAT 3940 0.0 37.97589 7 ACAACGA 380 0.0 37.894737 13 AGGGCGA 1895 0.0 37.875988 6 >>END_MODULE