SRR1546275_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546275_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1474694
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	7527	0.5104109733951586	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2942	0.1994990147108485	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTGCTT	30	2.1659216E-6	45.000004	20
CGTGCCG	30	2.1659216E-6	45.000004	41
TAGCGAT	30	2.1659216E-6	45.000004	1
TGCGAAT	30	2.1659216E-6	45.000004	44
TGCGTAC	30	2.1659216E-6	45.000004	28
AGTCGAT	30	2.1659216E-6	45.000004	26
AACGTAG	40	6.8175723E-9	45.0	1
AGCGTAA	35	1.2122473E-7	45.0	1
ACTATCG	20	7.033937E-4	45.0	16
CGAACTT	55	1.8189894E-12	45.0	43
ACACGAA	20	7.033937E-4	45.0	23
GTCGATG	70	0.0	45.0	1
CTCCGAC	25	3.8913455E-5	45.0	32
CGGCCTA	35	1.2122473E-7	45.0	45
CGGTTAG	35	1.2122473E-7	45.0	24
TTCACGG	45	3.8562575E-10	45.0	2
ACTTCGT	25	3.8913455E-5	45.0	37
GTTAGGC	20	7.033937E-4	45.0	16
GTTAGCG	50	2.1827873E-11	45.0	1
CACGATA	20	7.033937E-4	45.0	39