SRR1546272_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546272_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	950472
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	3989	0.41968621905747877	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3692	0.3884385863023845	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2093	0.2202063816714222	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1193	0.12551658544386368	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTAACGCGATCGTATGCCG	1000	0.10521088469728725	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AATATCG	20	7.032669E-4	45.000004	25
CCCCGTA	20	7.032669E-4	45.000004	40
ATTCACG	20	7.032669E-4	45.000004	1
AAGCACG	20	7.032669E-4	45.000004	1
CTACCGT	20	7.032669E-4	45.000004	37
CGTAATC	20	7.032669E-4	45.000004	33
ACCGTAT	20	7.032669E-4	45.000004	41
TATCGCG	20	7.032669E-4	45.000004	1
TAGCCGT	35	1.2116288E-7	45.0	44
GTATGCG	25	3.8902952E-5	45.0	1
TATTCCG	25	3.8902952E-5	45.0	1
CGACAAA	30	2.165105E-6	44.999996	12
TAGTTCG	30	2.165105E-6	44.999996	1
CCGATCG	220	0.0	43.977272	40
ATAACGG	70	0.0	41.785713	2
AGGGCGT	70	0.0	41.785713	6
CGATCGA	210	0.0	41.785713	41
CGATGAA	930	0.0	41.612904	19
CGGTCTA	125	0.0	41.399998	31
TTCACGG	60	3.6379788E-12	41.249996	2