SRR1546271_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546271_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1813778
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	6046	0.3333373764595226	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4498	0.2479906581731612	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCACA	20	7.034365E-4	45.000004	23
CTATCCG	20	7.034365E-4	45.000004	1
CCGCTTA	20	7.034365E-4	45.000004	40
TAGCCGT	60	0.0	45.000004	44
AGTATCA	20	7.034365E-4	45.000004	34
CACTCGA	30	2.166198E-6	45.000004	38
CCGGTCA	40	6.8193913E-9	45.000004	31
GACGATT	20	7.034365E-4	45.000004	27
ATACGCC	40	6.8193913E-9	45.000004	28
ATTGCGA	20	7.034365E-4	45.000004	1
TACGTTC	20	7.034365E-4	45.000004	32
GATCGAC	25	3.8917013E-5	45.0	24
GGTCGAT	50	2.1827873E-11	45.0	8
CACGATA	25	3.8917013E-5	45.0	31
TCGTACT	25	3.8917013E-5	45.0	43
ATCGGTC	45	3.8562575E-10	45.0	26
GATTCGC	25	3.8917013E-5	45.0	9
GCATGCG	50	2.1827873E-11	45.0	1
TCGGTAA	25	3.8917013E-5	45.0	35
TGGTCGA	25	3.8917013E-5	45.0	28