##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546271_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1813778 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.248840817343687 31.0 31.0 33.0 30.0 34.0 2 31.480689477984626 31.0 31.0 34.0 30.0 34.0 3 31.571776700345907 31.0 31.0 34.0 30.0 34.0 4 35.34034705460095 37.0 35.0 37.0 33.0 37.0 5 35.068533745585185 37.0 35.0 37.0 32.0 37.0 6 35.2155666239198 37.0 35.0 37.0 32.0 37.0 7 35.73844263189872 37.0 35.0 37.0 35.0 37.0 8 35.82097643702813 37.0 35.0 37.0 35.0 37.0 9 37.614751639947116 39.0 37.0 39.0 35.0 39.0 10 36.873729861096564 39.0 37.0 39.0 32.0 39.0 11 36.48610689952133 39.0 35.0 39.0 32.0 39.0 12 35.44346441515996 37.0 35.0 39.0 31.0 39.0 13 34.887073831527346 37.0 34.0 39.0 28.0 39.0 14 35.8172896572789 38.0 34.0 40.0 29.0 41.0 15 36.18316243774045 38.0 35.0 40.0 30.0 41.0 16 36.368783831317835 38.0 35.0 40.0 31.0 41.0 17 36.31102428191322 37.0 35.0 40.0 31.0 41.0 18 36.26436035722123 37.0 35.0 40.0 31.0 41.0 19 36.17657839051968 37.0 35.0 40.0 31.0 41.0 20 36.087753297261294 37.0 34.0 40.0 31.0 41.0 21 35.91674339417503 36.0 34.0 40.0 30.0 41.0 22 35.803603307571265 36.0 34.0 40.0 30.0 41.0 23 35.82449781616052 36.0 34.0 40.0 30.0 41.0 24 35.728812456651255 36.0 34.0 40.0 30.0 41.0 25 35.586488533877905 36.0 34.0 40.0 30.0 41.0 26 35.522028605485346 36.0 34.0 40.0 30.0 41.0 27 35.45658785143496 36.0 34.0 40.0 29.0 41.0 28 35.452200324405744 36.0 34.0 40.0 29.0 41.0 29 35.51718898343678 36.0 34.0 40.0 30.0 41.0 30 35.44052579753421 36.0 34.0 40.0 29.0 41.0 31 35.29132120910056 36.0 34.0 40.0 29.0 41.0 32 35.112601983263666 35.0 34.0 40.0 29.0 41.0 33 34.95119523999078 36.0 34.0 40.0 27.0 41.0 34 34.8292740346393 35.0 34.0 40.0 27.0 41.0 35 34.66276357966631 35.0 33.0 40.0 27.0 41.0 36 34.49709997585151 35.0 33.0 40.0 25.0 41.0 37 34.42512258942384 35.0 33.0 40.0 25.0 41.0 38 34.45584520266537 35.0 33.0 40.0 26.0 41.0 39 34.41495872151939 35.0 33.0 40.0 25.0 41.0 40 34.26246100680458 35.0 33.0 40.0 24.0 41.0 41 34.223413780517795 35.0 33.0 40.0 24.0 41.0 42 34.15747958129385 35.0 33.0 40.0 24.0 41.0 43 34.099625202202255 35.0 33.0 40.0 24.0 41.0 44 33.875000689169234 35.0 33.0 39.0 23.0 41.0 45 33.87532487437823 35.0 33.0 39.0 23.0 41.0 46 33.83763613849104 35.0 33.0 39.0 23.0 41.0 47 33.77343313238996 35.0 33.0 39.0 23.0 41.0 48 33.72597473340177 35.0 33.0 39.0 23.0 41.0 49 33.650636957775426 35.0 33.0 39.0 24.0 41.0 50 33.58289548114488 35.0 33.0 39.0 24.0 41.0 51 33.468302625789924 35.0 32.0 39.0 24.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 0.0 12 1.0 13 3.0 14 12.0 15 64.0 16 144.0 17 511.0 18 1057.0 19 2176.0 20 3743.0 21 5872.0 22 8833.0 23 12740.0 24 17623.0 25 23653.0 26 30088.0 27 35709.0 28 40983.0 29 47257.0 30 56410.0 31 68981.0 32 86592.0 33 112720.0 34 194726.0 35 278625.0 36 123824.0 37 150204.0 38 209010.0 39 302107.0 40 109.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.837701196066995 24.09412838836947 29.706943187093458 13.361227228470076 2 29.721608708452745 24.846866595581158 32.465053606339914 12.966471089626182 3 28.85485434270346 24.963143229215483 32.273409424968214 13.90859300311284 4 25.44539629436458 28.011697131622505 31.501374479125893 15.041532094887025 5 23.29584987798948 32.305221476939295 30.262854660272648 14.13607398479858 6 22.309510866269193 41.04074478795089 26.001362901082715 10.6483814446972 7 88.24133934803487 4.934341468470784 5.352143426593552 1.4721757569007894 8 90.83708149508925 2.928362787507622 4.941508828533591 1.2930468888695308 9 87.57962661362086 4.318775506153454 5.949019119208635 2.1525787610170597 10 56.87311236546038 22.69561103949877 10.478625278286538 9.95265131675431 11 49.67366458298645 19.245133638185045 17.750297996778 13.330903782050504 12 43.024780320414074 21.044637215800392 22.13567481797662 13.794907645808912 13 21.256129471192175 41.097256665369194 22.9776190912008 14.668994772237836 14 15.399128228482207 42.284392025925996 27.398281377324018 14.918198368267783 15 14.664584089122263 21.68600567434383 48.69013738175234 14.959272854781567 16 17.23198759715908 17.668700359139873 44.97716920152301 20.12214284217804 17 17.592560941857272 18.15707324711183 27.22036544714954 37.030000363881356 18 23.372595764200472 21.9048858239542 32.959601450673674 21.762916961171655 19 30.761316985871478 23.70918601945773 24.38159466042702 21.14790233424377 20 33.64182386157512 22.671021481129443 23.763106620545624 19.924048036749813 21 24.567890888521088 26.88708320422896 26.513774012034546 22.0312518952154 22 24.01021514209567 23.732728040587105 25.072583304020668 27.184473513296552 23 20.31511022848441 28.973391451434523 24.52703693616308 26.18446138391799 24 21.76473636795683 23.658849098401237 36.29595242637191 18.28046210727002 25 19.46914120691727 24.63383060109892 34.11338102016895 21.783647171814852 26 18.227037708032626 34.32851208913109 25.80012548393464 21.644324718901654 27 18.933243208375007 33.498421526780014 28.443999210487725 19.124336054357258 28 15.877466812366231 28.30616536312603 37.37000889855319 18.446358925954552 29 16.614106026206073 24.568662758066314 37.022116267812265 21.795114947915344 30 19.882587615463414 29.363461239468116 31.220799899436425 19.533151245632048 31 30.78226773067046 25.65104439462823 23.579732470015625 19.986955404685688 32 31.756367096745024 25.907194816565205 24.48827805828497 17.8481600284048 33 29.61464964290007 27.85677188718796 23.157740362933062 19.370838106978912 34 21.181258125305302 27.751797629037288 27.33195572997357 23.73498851568384 35 21.783702305353795 26.588700491460365 29.67535166927816 21.95224553390768 36 30.350406720116794 25.91728425419208 25.165317916525616 18.56699110916551 37 21.116421083506363 32.06505978129628 28.00436437094286 18.8141547642545 38 21.213842046821608 32.22412004115167 22.875511777075257 23.686526134951468 39 21.352502897267474 31.332831250572013 25.93801446483528 21.37665138732524 40 24.850670809768342 25.789705245074096 24.82404131045806 24.535582634699505 41 18.578624285882835 24.12583017326266 26.947013361061828 30.348532179792677 42 23.08297928412408 25.66802552462319 23.758199735579545 27.490795455673183 43 23.88649548070381 25.080301999472926 25.241236799652437 25.791965720170822 44 20.49920111502069 30.178334945070457 27.275223318399494 22.04724062150936 45 18.55083698225472 36.48368212647854 22.623772038253858 22.341708853012882 46 23.09516379623085 32.51020797473561 24.85304155194296 19.54158667709058 47 21.869600359029604 27.776938522796062 26.24648661523075 24.10697450294358 48 24.377294244389336 23.6136395964666 29.753916962274324 22.255149196869738 49 22.333659356326958 23.31674548924951 31.292032431752947 23.05756272267058 50 20.82581219972896 31.890617264075317 25.829180858958484 21.454389677237238 51 18.006283018098134 33.33500571734799 24.49274387493949 24.165967389614384 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1059.0 1 1600.5 2 2142.0 3 5667.5 4 9193.0 5 7183.5 6 5174.0 7 5561.0 8 5948.0 9 6238.5 10 6529.0 11 6684.0 12 6839.0 13 6744.0 14 6649.0 15 6228.0 16 5807.0 17 5472.5 18 5138.0 19 5168.0 20 5198.0 21 5499.0 22 5800.0 23 6620.5 24 7441.0 25 7330.0 26 8290.5 27 9362.0 28 12765.0 29 16168.0 30 18549.5 31 20931.0 32 22815.0 33 24699.0 34 31192.0 35 37685.0 36 42145.5 37 46606.0 38 57557.5 39 68509.0 40 96491.5 41 124474.0 42 157329.0 43 190184.0 44 188293.5 45 186403.0 46 174939.5 47 163476.0 48 146856.5 49 130237.0 50 128310.0 51 126383.0 52 118993.5 53 111604.0 54 105390.5 55 99177.0 56 93174.0 57 87171.0 58 82724.5 59 78278.0 60 73763.0 61 69248.0 62 58190.5 63 47133.0 64 40531.5 65 33930.0 66 27512.5 67 21095.0 68 18112.5 69 15130.0 70 13108.0 71 11086.0 72 9147.0 73 7208.0 74 5510.5 75 2799.5 76 1786.0 77 1384.0 78 982.0 79 753.0 80 524.0 81 366.0 82 208.0 83 134.5 84 61.0 85 50.0 86 39.0 87 35.0 88 31.0 89 17.5 90 4.0 91 4.0 92 4.0 93 8.0 94 12.0 95 6.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1813778.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 16.805312888061955 #Duplication Level Percentage of deduplicated Percentage of total 1 80.96734445525865 13.6068155728611 2 8.165390817665116 2.7444389508834064 3 2.569020446600419 1.2951957726284606 4 1.1933860769646565 0.8022090567859136 5 0.6606363071991798 0.5551099923848016 6 0.38002298518647243 0.38318431024284016 7 0.260817458957098 0.3068183303110302 8 0.20351531475435392 0.27361108335674633 9 0.17593404368557056 0.26609639866181767 >10 2.278245588934929 9.550777942973724 >50 1.2724386945061312 15.691254944792815 >100 1.8662655234546306 53.2949371558488 >500 0.006317307134444644 0.6403943715540035 >1k 3.32489849181297E-4 0.25133006572287825 >5k 3.32489849181297E-4 0.33782605099166785 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 6046 0.3333373764595226 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4498 0.2479906581731612 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.03291472274997271 0.0 2 0.0 0.0 0.0 0.09025360325243773 0.0 3 0.0 0.0 0.0 0.13110755561044404 0.0 4 0.0 0.0 0.0 0.20090661591440628 0.0 5 0.0 0.0 0.0 0.3194437246454638 0.0 6 0.0 0.0 0.0 0.43489335519561934 0.0 7 0.0 0.0 0.0 0.49868285975461163 0.0 8 0.0 0.0 0.0 0.6565301817532245 0.0 9 0.0 0.0 0.0 0.7108367176137322 0.0 10 0.0 0.0 0.0 0.8202216588799732 0.0 11 0.0 0.0 0.0 0.9751469033145181 0.0 12 0.0 0.0 0.0 1.099914101946324 0.0 13 0.0 0.0 0.0 1.1518498956322107 0.0 14 0.0 0.0 0.0 1.171697969652295 0.0 15 0.0 0.0 0.0 1.2063218321095526 0.0 16 0.0 0.0 0.0 1.2841703890994378 0.0 17 0.0 0.0 0.0 1.3740931911182075 0.0 18 0.0 0.0 0.0 1.4985847220552901 0.0 19 0.0 0.0 0.0 1.5595072825891592 0.0 20 0.0 0.0 0.0 1.6183347686431304 0.0 21 0.0 0.0 0.0 1.6979475988792454 0.0 22 0.0 0.0 0.0 1.7794349694394793 0.0 23 0.0 0.0 0.0 1.8812114823313548 0.0 24 0.0 0.0 0.0 1.953932620199385 0.0 25 0.0 0.0 0.0 2.0156821838174244 0.0 26 0.0 0.0 0.0 2.0759982754229016 0.0 27 0.0 0.0 0.0 2.134660360860039 0.0 28 1.102670778893558E-4 0.0 0.0 2.2020335454504356 0.0 29 1.102670778893558E-4 0.0 0.0 2.274699549779521 0.0 30 1.102670778893558E-4 0.0 0.0 2.3674341622844692 0.0 31 1.102670778893558E-4 0.0 0.0 2.4565299612190685 0.0 32 1.102670778893558E-4 0.0 0.0 2.5368595274614645 0.0 33 1.102670778893558E-4 0.0 0.0 2.6198906371121495 0.0 34 1.102670778893558E-4 0.0 0.0 2.709262103741472 0.0 35 1.102670778893558E-4 0.0 0.0 2.828240280784087 0.0 36 1.102670778893558E-4 0.0 0.0 2.917777148030244 0.0 37 1.654006168340337E-4 0.0 0.0 3.011724698391975 0.0 38 2.205341557787116E-4 0.0 0.0 3.0987254228466767 0.0 39 2.205341557787116E-4 0.0 0.0 3.202817544374229 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGCACA 20 7.034365E-4 45.000004 23 CTATCCG 20 7.034365E-4 45.000004 1 CCGCTTA 20 7.034365E-4 45.000004 40 TAGCCGT 60 0.0 45.000004 44 AGTATCA 20 7.034365E-4 45.000004 34 CACTCGA 30 2.166198E-6 45.000004 38 CCGGTCA 40 6.8193913E-9 45.000004 31 GACGATT 20 7.034365E-4 45.000004 27 ATACGCC 40 6.8193913E-9 45.000004 28 ATTGCGA 20 7.034365E-4 45.000004 1 TACGTTC 20 7.034365E-4 45.000004 32 GATCGAC 25 3.8917013E-5 45.0 24 GGTCGAT 50 2.1827873E-11 45.0 8 CACGATA 25 3.8917013E-5 45.0 31 TCGTACT 25 3.8917013E-5 45.0 43 ATCGGTC 45 3.8562575E-10 45.0 26 GATTCGC 25 3.8917013E-5 45.0 9 GCATGCG 50 2.1827873E-11 45.0 1 TCGGTAA 25 3.8917013E-5 45.0 35 TGGTCGA 25 3.8917013E-5 45.0 28 >>END_MODULE