SRR1546270_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546270_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1356268
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

$Per sequence GC content graph$

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	5571	0.41075952540353383	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	3021	0.2227435875505431	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2883	0.21256860738438124	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGAAAG	20	7.033736E-4	45.0	19
TCGTTGC	20	7.033736E-4	45.0	43
ACACGGT	25	3.8911792E-5	45.0	13
CTATCGA	20	7.033736E-4	45.0	24
GAATCGG	20	7.033736E-4	45.0	22
GCAAACG	25	3.8911792E-5	45.0	10
TATGCGT	20	7.033736E-4	45.0	20
ACGATAT	20	7.033736E-4	45.0	14
ACTAGCG	20	7.033736E-4	45.0	21
ACCTACG	20	7.033736E-4	45.0	39
TCCGTAC	20	7.033736E-4	45.0	13
GTTCACG	25	3.8911792E-5	45.0	1
TTACGTC	25	3.8911792E-5	45.0	16
CCGAACT	45	3.8562575E-10	45.0	42
GGACCGT	40	6.8157533E-9	45.0	8
GTGACGT	20	7.033736E-4	45.0	14
CGCCGAA	20	7.033736E-4	45.0	28
GCGTCTA	25	3.8911792E-5	45.0	9
TATCGTG	35	1.2121382E-7	45.0	1
TACGTCC	25	3.8911792E-5	45.0	17