SRR1546269_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546269_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2173630
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	7838	0.36059494946242	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7280	0.3349236070536384	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	3960	0.1821837203203857	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2934	0.13498157460101304	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	2849	0.13107106545272193	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	2196	0.10102915399585026	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATATACG	105	0.0	45.000004	1
CGTAGGT	30	2.1663982E-6	45.000004	3
CGCATAC	20	7.034677E-4	45.0	36
CGACGGT	300	0.0	43.500004	28
CTATGCG	215	0.0	42.906975	1
CTAAGCG	100	0.0	42.75	1
CGTTTTT	6055	0.0	42.65896	1
CTCACGA	325	0.0	42.23077	24
CGGTCTA	310	0.0	42.09677	31
ATACCGG	75	0.0	42.000004	2
TATTACG	60	3.6379788E-12	41.250004	1
CGCATCG	55	6.184564E-11	40.909092	21
TCGTACA	110	0.0	40.909092	34
AGGGCGC	655	0.0	40.190838	6
CACGGTA	45	1.929584E-8	40.0	13
ACGTTAT	45	1.929584E-8	40.0	28
CGACATA	45	1.929584E-8	40.0	36
TCGACAC	45	1.929584E-8	40.0	34
AGTACGT	45	1.929584E-8	40.0	25
TACTCGC	220	0.0	39.886364	45