##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546269_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2173630 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.210236792830425 31.0 31.0 33.0 30.0 34.0 2 31.442624549716374 31.0 31.0 34.0 30.0 34.0 3 31.520955728435844 31.0 31.0 34.0 30.0 34.0 4 35.29782253649425 37.0 35.0 37.0 33.0 37.0 5 35.024134282283555 37.0 35.0 37.0 32.0 37.0 6 35.16268270128771 37.0 35.0 37.0 32.0 37.0 7 35.69599241821285 37.0 35.0 37.0 35.0 37.0 8 35.76381168828181 37.0 35.0 37.0 35.0 37.0 9 37.46254146289847 39.0 37.0 39.0 35.0 39.0 10 36.798910118097375 39.0 37.0 39.0 32.0 39.0 11 36.48980645280015 39.0 35.0 39.0 32.0 39.0 12 35.584595354315134 37.0 35.0 39.0 31.0 39.0 13 35.08600037724912 37.0 35.0 39.0 30.0 39.0 14 36.04661372910753 38.0 35.0 40.0 30.0 41.0 15 36.344868721907595 38.0 35.0 40.0 31.0 41.0 16 36.487883862478895 38.0 35.0 40.0 31.0 41.0 17 36.41526432741543 38.0 35.0 40.0 31.0 41.0 18 36.386763156562985 38.0 35.0 40.0 31.0 41.0 19 36.31947939621739 37.0 35.0 40.0 31.0 41.0 20 36.21952862262667 37.0 35.0 40.0 31.0 41.0 21 36.06427634878061 37.0 34.0 40.0 30.0 41.0 22 35.955815847223306 37.0 34.0 40.0 30.0 41.0 23 35.94121216582399 37.0 34.0 40.0 30.0 41.0 24 35.81721544145048 37.0 34.0 40.0 30.0 41.0 25 35.682522784466535 36.0 34.0 40.0 30.0 41.0 26 35.63829952659837 36.0 34.0 40.0 30.0 41.0 27 35.554400242911626 36.0 34.0 40.0 29.0 41.0 28 35.51795107723026 36.0 34.0 40.0 29.0 41.0 29 35.5636184631239 36.0 34.0 40.0 30.0 41.0 30 35.47561452501115 36.0 34.0 40.0 29.0 41.0 31 35.359945804943806 36.0 34.0 40.0 29.0 41.0 32 35.18911038217176 36.0 34.0 40.0 29.0 41.0 33 35.020800228189714 36.0 34.0 40.0 27.0 41.0 34 34.87858145130496 36.0 34.0 40.0 27.0 41.0 35 34.718204570235045 36.0 34.0 40.0 26.0 41.0 36 34.51806517208541 36.0 33.0 40.0 25.0 41.0 37 34.41489995997479 36.0 33.0 40.0 24.0 41.0 38 34.40400436136785 35.0 33.0 40.0 25.0 41.0 39 34.34483007687601 35.0 33.0 40.0 24.0 41.0 40 34.163326325087525 35.0 33.0 40.0 23.0 41.0 41 34.122971250856864 35.0 33.0 40.0 23.0 41.0 42 34.079871459264 35.0 33.0 40.0 23.0 41.0 43 34.01202320542134 35.0 33.0 40.0 23.0 41.0 44 33.78592906796465 35.0 33.0 40.0 23.0 41.0 45 33.78248275925525 35.0 33.0 39.0 23.0 41.0 46 33.73691520635987 35.0 33.0 39.0 23.0 41.0 47 33.71024645408832 35.0 33.0 39.0 23.0 41.0 48 33.623523322736624 35.0 33.0 39.0 23.0 41.0 49 33.54045490722892 35.0 32.0 39.0 24.0 41.0 50 33.45817825480878 35.0 32.0 39.0 23.0 41.0 51 33.367798107313575 35.0 32.0 39.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 1.0 11 0.0 12 1.0 13 9.0 14 24.0 15 75.0 16 283.0 17 712.0 18 1462.0 19 2886.0 20 4650.0 21 7486.0 22 10994.0 23 15674.0 24 21454.0 25 28892.0 26 36979.0 27 43688.0 28 49418.0 29 57001.0 30 68329.0 31 83096.0 32 103286.0 33 132678.0 34 222962.0 35 309119.0 36 156142.0 37 188834.0 38 258180.0 39 369093.0 40 220.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.24917304233011 25.208568155573857 27.235776098047964 14.306482704048069 2 29.456347216407575 27.59655507147031 30.196675607164053 12.750422104958064 3 28.86995486812383 26.6153393171791 31.30233756435088 13.212368250346195 4 26.6999903387421 28.935467397855202 29.911484475278684 14.453057788124013 5 24.215436849877854 33.07821478356482 28.86917276629417 13.837175600263155 6 21.94683547797923 41.07262965638126 26.025312495686936 10.955222369952567 7 85.52775771405436 5.789669815009915 6.67537713410286 2.0071953368328557 8 87.15494357365328 4.779608305001312 6.105684960181815 1.9597631611635837 9 82.08600359766841 6.839020440461348 7.92434775007706 3.1506282117931756 10 50.67730018448402 23.91980235826705 13.633047022722359 11.769850434526576 11 46.40159548773251 20.894310439219186 18.8821464554685 13.821947617579807 12 40.69685273022547 22.576243426894184 22.74770775154925 13.979196091331092 13 22.639823705046396 40.131577131342496 22.328869218772283 14.89972994483882 14 16.567171045670147 41.78130592603157 26.57434798010701 15.077175048191274 15 16.11727846965675 23.582486439734453 44.79373214392514 15.506502946683659 16 17.040020610683513 19.62633934938329 42.652889406200686 20.68075063373251 17 17.156139729392766 20.31587712720196 28.198175402437396 34.32980774096787 18 22.085911585688457 24.400150899647134 32.20796547710512 21.30597203755929 19 29.732107120347067 25.3299779631308 23.846238780289195 21.091676136232937 20 30.69850894586475 23.818589180311275 24.86513344037394 20.617768433450035 21 22.199960434848617 28.189112222411357 27.63796046245221 21.972966880287814 22 22.59119537363765 25.764688562450832 24.560021714827272 27.084094349084253 23 20.77837534446985 29.65256276367183 24.500996029683066 25.068065862175253 24 20.95154189075418 24.396148378518884 35.929390006578856 18.722919724148085 25 18.500434756605312 26.404447859111258 33.12155242612588 21.973564958157553 26 17.62204238991917 34.23218303023054 26.066763892658823 22.079010687191474 27 19.28819532303106 32.83824753982969 27.807814577457986 20.065742559681272 28 16.091377097298068 30.293104162161917 35.34304366428509 18.272475076254928 29 16.92629380345321 25.84887952411404 34.81977153425376 22.40505513817899 30 19.079926206392074 31.20917543464159 30.247006160202055 19.46389219876428 31 28.472509120687512 28.18957228231116 23.794344023591872 19.543574573409458 32 28.98943242410162 28.164176975842253 24.726149344644675 18.120241255411454 33 27.350791072997705 28.732995035953678 23.72924554777032 20.186968343278295 34 20.48025652940013 28.853944783610824 27.47914778504161 23.186650901947434 35 22.353988489301308 26.591370196399573 28.67189908126038 22.38274223303874 36 29.14290840667455 26.79692495962974 24.892322980452057 19.16784365324365 37 21.526984813422708 32.754792674006154 27.27800959684951 18.440212915721627 38 21.985204473622467 32.72120830132083 23.414334546357935 21.879252678698766 39 22.187630829534005 30.722064012734457 25.841932619627077 21.248372538104462 40 23.90508044147348 27.07585927687785 25.04460280728551 23.974457474363163 41 18.48299848640293 25.811062600350564 26.392486301716485 29.31345261153002 42 22.701379719639498 26.938899444707705 23.454819817540244 26.90490101811256 43 22.966098185983817 26.61515529321918 25.34796630521294 25.070780215584072 44 20.709918431379766 30.215768093005707 27.245989427823503 21.82832404779102 45 18.718641167079955 36.47046645473241 22.32224435621518 22.48864802197246 46 22.421985342491592 32.73188169099617 25.257242492972587 19.588890473539657 47 22.98749097132447 28.275419459613644 26.346848359656427 22.390241209405463 48 23.88617197959174 25.183954950934613 28.94857910499947 21.981293964474176 49 21.904878015117568 25.223428090337364 30.18071152864103 22.69098236590404 50 20.420448742426263 32.49297258503057 26.332954550682498 20.753624121860668 51 19.670367081794048 32.809493796092255 24.22160165253516 23.29853746957854 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2270.0 1 2827.0 2 3384.0 3 8389.0 4 13394.0 5 10342.5 6 7291.0 7 7673.5 8 8056.0 9 8607.5 10 9159.0 11 9503.0 12 9847.0 13 9710.0 14 9573.0 15 9229.0 16 8885.0 17 8604.0 18 8323.0 19 8200.5 20 8078.0 21 8485.0 22 8892.0 23 8520.0 24 8148.0 25 10513.5 26 14616.5 27 16354.0 28 22134.0 29 27914.0 30 31817.5 31 35721.0 32 41400.0 33 47079.0 34 51637.0 35 56195.0 36 60940.0 37 65685.0 38 73218.5 39 80752.0 40 113177.0 41 145602.0 42 170633.5 43 195665.0 44 207400.5 45 219136.0 46 203095.5 47 187055.0 48 181980.5 49 176906.0 50 160832.5 51 144759.0 52 134873.0 53 124987.0 54 113133.5 55 101280.0 56 98760.0 57 96240.0 58 90436.5 59 84633.0 60 78395.0 61 72157.0 62 62453.0 63 52749.0 64 45997.5 65 39246.0 66 31904.0 67 24562.0 68 22438.0 69 20314.0 70 17338.5 71 14363.0 72 13081.5 73 11800.0 74 9295.5 75 5370.5 76 3950.0 77 2814.0 78 1678.0 79 1259.0 80 840.0 81 754.5 82 669.0 83 447.0 84 225.0 85 156.5 86 88.0 87 56.5 88 25.0 89 21.0 90 17.0 91 14.0 92 11.0 93 7.0 94 3.0 95 1.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2173630.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 17.719590139109577 #Duplication Level Percentage of deduplicated Percentage of total 1 81.83482529043339 14.500795632521182 2 7.384131370745467 2.6168756284590216 3 2.353276622045318 1.250972916797739 4 1.1122495616980328 0.7883442546277363 5 0.656494920302235 0.5816410458081505 6 0.43807184635456736 0.46574721413315506 7 0.3396384661257945 0.4212778090657451 8 0.2514884717544405 0.35650181153597765 9 0.2026621445089905 0.3231981123671077 >10 2.503120449238076 10.871946678601667 >50 1.2369044588163802 16.058354275134732 >100 1.6755716680337644 49.22577679699986 >500 0.00893638222908855 0.9872596314610661 >1k 0.0021026781715502473 0.8472138860226556 >5k 5.256695428875618E-4 0.7040943064642134 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 7838 0.36059494946242 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7280 0.3349236070536384 No Hit AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 3960 0.1821837203203857 No Hit AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 2934 0.13498157460101304 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 2849 0.13107106545272193 No Hit GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA 2196 0.10102915399585026 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.06749078730050653 0.0 2 0.0 0.0 0.0 0.1832418580899233 0.0 3 0.0 0.0 0.0 0.2579095798272935 0.0 4 0.0 0.0 0.0 0.38507013613172436 0.0 5 0.0 0.0 0.0 0.5988599715682982 0.0 6 0.0 0.0 0.0 0.8028965371291342 0.0 7 0.0 0.0 0.0 0.9213619613273648 0.0 8 0.0 0.0 0.0 1.1843322000524468 0.0 9 0.0 0.0 0.0 1.28848976136693 0.0 10 4.600598997989538E-5 0.0 0.0 1.4816229073025309 0.0 11 4.600598997989538E-5 0.0 0.0 1.6910421736910146 0.0 12 9.201197995979076E-5 0.0 0.0 1.8880858287749065 0.0 13 9.201197995979076E-5 0.0 0.0 1.967860215400045 0.0 14 9.201197995979076E-5 0.0 0.0 2.0036988815943837 0.0 15 9.201197995979076E-5 0.0 0.0 2.0564217461113437 0.0 16 9.201197995979076E-5 0.0 0.0 2.17672740990877 0.0 17 9.201197995979076E-5 0.0 0.0 2.312215050399562 0.0 18 9.201197995979076E-5 0.0 0.0 2.506084292174841 0.0 19 9.201197995979076E-5 0.0 0.0 2.5866867866196177 0.0 20 9.201197995979076E-5 0.0 0.0 2.6752023113409367 0.0 21 9.201197995979076E-5 0.0 0.0 2.7846505615031076 0.0 22 9.201197995979076E-5 0.0 0.0 2.8942828356251984 0.0 23 9.201197995979076E-5 0.0 0.0 3.0260899969175985 0.0 24 9.201197995979076E-5 0.0 0.0 3.1237147076549365 0.0 25 9.201197995979076E-5 0.0 0.0 3.2042711961097337 0.0 26 9.201197995979076E-5 0.0 0.0 3.280089067596601 0.0 27 9.201197995979076E-5 0.0 0.0 3.355906939083469 0.0 28 9.201197995979076E-5 0.0 0.0 3.4439163979150087 0.0 29 9.201197995979076E-5 0.0 0.0 3.5282913835381366 0.0 30 9.201197995979076E-5 0.0 0.0 3.642616268638177 0.0 31 1.3801796993968615E-4 0.0 0.0 3.7543188123093625 0.0 32 1.3801796993968615E-4 0.0 0.0 3.854381840515635 0.0 33 1.3801796993968615E-4 0.0 0.0 3.955088952581626 0.0 34 1.8402395991958152E-4 0.0 0.0 4.055612040687698 0.0 35 1.8402395991958152E-4 0.0 0.0 4.179644189673495 0.0 36 2.3002994989947692E-4 0.0 0.0 4.2882183260260485 0.0 37 2.3002994989947692E-4 0.0 0.0 4.394722192829507 0.0 38 2.3002994989947692E-4 0.0 0.0 4.500213927853406 0.0 39 2.3002994989947692E-4 0.0 0.0 4.601841159718996 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATATACG 105 0.0 45.000004 1 CGTAGGT 30 2.1663982E-6 45.000004 3 CGCATAC 20 7.034677E-4 45.0 36 CGACGGT 300 0.0 43.500004 28 CTATGCG 215 0.0 42.906975 1 CTAAGCG 100 0.0 42.75 1 CGTTTTT 6055 0.0 42.65896 1 CTCACGA 325 0.0 42.23077 24 CGGTCTA 310 0.0 42.09677 31 ATACCGG 75 0.0 42.000004 2 TATTACG 60 3.6379788E-12 41.250004 1 CGCATCG 55 6.184564E-11 40.909092 21 TCGTACA 110 0.0 40.909092 34 AGGGCGC 655 0.0 40.190838 6 CACGGTA 45 1.929584E-8 40.0 13 ACGTTAT 45 1.929584E-8 40.0 28 CGACATA 45 1.929584E-8 40.0 36 TCGACAC 45 1.929584E-8 40.0 34 AGTACGT 45 1.929584E-8 40.0 25 TACTCGC 220 0.0 39.886364 45 >>END_MODULE