SRR1546268_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546268_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1890272
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	5806	0.30715156337289024	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5367	0.2839273924599211	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2969	0.15706734268930608	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTTTAGT	20	7.034441E-4	45.000004	15
ATTACGC	20	7.034441E-4	45.000004	11
CGTTCGA	20	7.034441E-4	45.000004	14
TACGACC	20	7.034441E-4	45.000004	20
CGCACAT	20	7.034441E-4	45.000004	35
CCACGAA	20	7.034441E-4	45.000004	25
GCGTATC	20	7.034441E-4	45.000004	13
TACGTCA	40	6.8193913E-9	45.000004	29
CTATGCG	35	1.2124838E-7	45.0	1
CGTATAA	35	1.2124838E-7	45.0	30
TAGGTTA	25	3.8917646E-5	45.0	20
TCTAGCG	45	3.8562575E-10	45.0	1
CATAGGT	35	1.2124838E-7	45.0	26
TATTACG	35	1.2124838E-7	45.0	1
CGTACTT	25	3.8917646E-5	45.0	13
ACGAGTT	25	3.8917646E-5	45.0	34
ATCGATT	50	2.1827873E-11	45.0	42
GTACGAT	45	3.8562575E-10	45.0	9
TTGATCG	30	2.1662472E-6	44.999996	17
CGCATCG	60	0.0	44.999996	21