##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546268_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1890272 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.218107235360836 31.0 31.0 33.0 30.0 34.0 2 31.457875903573665 31.0 31.0 34.0 30.0 34.0 3 31.521948693098135 31.0 31.0 34.0 30.0 34.0 4 35.29371116960945 37.0 35.0 37.0 33.0 37.0 5 35.014115428890655 37.0 35.0 37.0 32.0 37.0 6 35.15398630461648 37.0 35.0 37.0 32.0 37.0 7 35.70229575426182 37.0 35.0 37.0 35.0 37.0 8 35.78507325929813 37.0 35.0 37.0 35.0 37.0 9 37.51606012256437 39.0 37.0 39.0 35.0 39.0 10 36.82434379814122 39.0 37.0 39.0 32.0 39.0 11 36.49587466777268 39.0 35.0 39.0 32.0 39.0 12 35.397056614074586 37.0 35.0 39.0 30.0 39.0 13 34.81221273975385 37.0 34.0 39.0 27.0 39.0 14 35.7111447453065 37.0 34.0 40.0 27.0 41.0 15 36.07771527060656 37.0 34.0 40.0 30.0 41.0 16 36.27930689339947 37.0 35.0 40.0 31.0 41.0 17 36.22963203179225 37.0 35.0 40.0 31.0 41.0 18 36.19776518934841 37.0 35.0 40.0 31.0 41.0 19 36.12136242826429 37.0 35.0 40.0 31.0 41.0 20 36.01490949450661 36.0 34.0 40.0 30.0 41.0 21 35.85179275786765 36.0 34.0 40.0 30.0 41.0 22 35.73252579522947 36.0 34.0 40.0 30.0 41.0 23 35.765033815239285 36.0 34.0 40.0 30.0 41.0 24 35.65343664827073 36.0 34.0 40.0 30.0 41.0 25 35.50323974539114 35.0 34.0 40.0 30.0 41.0 26 35.44154862369014 35.0 34.0 40.0 30.0 41.0 27 35.34965444126559 35.0 34.0 40.0 29.0 41.0 28 35.34792347344721 36.0 34.0 40.0 29.0 41.0 29 35.3973756157844 36.0 34.0 40.0 29.0 41.0 30 35.316715266374366 36.0 34.0 40.0 29.0 41.0 31 35.183640238018654 36.0 34.0 40.0 29.0 41.0 32 35.013021935467485 35.0 34.0 40.0 29.0 41.0 33 34.85954349426961 35.0 34.0 40.0 27.0 41.0 34 34.748372191938515 35.0 34.0 40.0 27.0 41.0 35 34.57823583061062 35.0 33.0 40.0 26.0 41.0 36 34.390384558412755 35.0 33.0 40.0 25.0 41.0 37 34.29207013593811 35.0 33.0 40.0 24.0 41.0 38 34.2830174705016 35.0 33.0 40.0 25.0 41.0 39 34.25779834859745 35.0 33.0 40.0 24.0 41.0 40 34.06636187807892 35.0 33.0 40.0 23.0 41.0 41 33.992009615547396 35.0 33.0 40.0 23.0 41.0 42 33.952181484992636 35.0 33.0 39.0 23.0 41.0 43 33.879733710280846 35.0 33.0 39.0 23.0 41.0 44 33.67120922279968 35.0 33.0 39.0 23.0 41.0 45 33.671849342316875 35.0 33.0 39.0 23.0 41.0 46 33.62093550557803 35.0 33.0 39.0 23.0 41.0 47 33.56954290176228 35.0 33.0 39.0 23.0 41.0 48 33.462306482876535 35.0 32.0 39.0 23.0 41.0 49 33.41512068104485 35.0 32.0 39.0 24.0 41.0 50 33.32964250647526 35.0 32.0 39.0 24.0 40.0 51 33.245321308256166 35.0 32.0 38.0 23.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 1.0 11 2.0 12 4.0 13 7.0 14 29.0 15 73.0 16 211.0 17 604.0 18 1276.0 19 2518.0 20 4264.0 21 6678.0 22 9829.0 23 14130.0 24 19128.0 25 25472.0 26 32828.0 27 38576.0 28 43825.0 29 50881.0 30 60730.0 31 73818.0 32 91986.0 33 119653.0 34 206364.0 35 292929.0 36 128047.0 37 155597.0 38 209698.0 39 300951.0 40 162.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.601128303228315 24.395113507474058 29.264254033281983 13.739504156015641 2 30.55544387262785 26.457303499178952 29.84628667197102 13.140965956222173 3 29.615790743342757 25.578593980125614 30.997073437050332 13.808541839481304 4 27.32289321325185 28.06807697516548 30.08852694215436 14.520502869428315 5 24.155095139747086 32.41321883834708 28.8813461766349 14.550339845270946 6 22.126604001963738 41.205181053308735 25.943726617121772 10.724488327605762 7 86.39423321088182 5.591682043642397 6.037649608098729 1.9764351373770548 8 88.48112864180393 3.974137055407899 5.4976215063229 2.047112796465271 9 84.25258375514211 5.940097509776371 6.95090442010462 2.856414314976892 10 54.90601352609572 22.308535491188568 11.872471263394898 10.912979719320818 11 50.57938751671717 20.263009767906418 16.914391156405003 12.243211558971408 12 44.96590966802661 21.130874286875116 19.96072522896176 13.942490816136512 13 22.390745882074114 40.78614083052598 21.329470044522694 15.493643242877214 14 15.186544581943762 44.114709417480654 26.082066496250274 14.616679504325303 15 14.788929847133112 23.01996749674121 47.67641905503547 14.514683601090214 16 16.508946860557632 17.882611602986238 46.40406248412926 19.20437905232686 17 16.444882006399077 18.73947241455198 27.96407077923177 36.85157479981717 18 21.769829950398673 23.671090721335343 32.7106363528635 21.84844297540248 19 32.009520323001134 24.75548492492086 23.574914086438355 19.660080665639654 20 34.16032190076349 23.667652062771918 22.931937837517562 19.24008819894703 21 24.412888727124983 28.161978805166665 26.306901863858744 21.118230603849604 22 22.802432665775086 25.381162076145657 24.515995581588257 27.300409676491 23 21.130874286875116 30.134816576661983 23.35817279206379 25.376136344399114 24 21.049457432581132 24.123142066326963 36.927383995530796 17.900016505561105 25 19.192634710771785 25.2305488310677 34.080809534289244 21.496006923871274 26 17.579745137207766 35.91218618272926 25.117760830187404 21.390307849875573 27 19.684468690220243 34.028965143640704 27.596187215384877 18.690378950754177 28 16.89164310744697 29.479831473988927 36.583253626991244 17.04527179157285 29 16.682308154593624 26.257808400060945 35.52361776506238 21.536265680283048 30 19.40487929779418 30.87433977755582 30.35462621252391 19.366154712126086 31 30.237129894533698 26.92051725889184 23.316274060029457 19.526078786545007 32 32.430941155558564 26.101587496402633 24.97577068273772 16.491700665301078 33 28.980591153019247 28.065061536117554 23.014042423524234 19.940304887338964 34 21.15161204313453 29.009211372754823 25.919232787662306 23.919943796448344 35 22.34011824753263 25.735343908178294 28.942289786866652 22.982248057422424 36 31.434365001438948 25.600495590052645 24.224344432970494 18.74079497553791 37 21.799614023801865 33.16623216129742 26.80238611162838 18.231767703272332 38 21.552771241387482 33.59881540857612 22.01328697668907 22.83512637334733 39 22.487081224289415 31.189585414162618 24.992487853599904 21.330845507948062 40 25.12463814731425 25.385552978618954 24.76908085185624 24.72072802221056 41 18.343286045606135 24.886577169846454 26.711922940190618 30.05821384435679 42 23.151535863621746 27.057481674594978 22.68858661610604 27.102395845677236 43 23.752137258553265 26.30727218093481 24.71628421729783 25.2243063432141 44 20.524771038242115 31.073411657158335 26.2812970831711 22.12052022142845 45 18.123635117062516 37.67801670870647 21.942556415161416 22.25579175906959 46 22.832428348936027 33.280184015845336 24.045005163278088 19.842382471940546 47 23.817101454182254 27.386005823500533 25.46321375971289 23.333678962604324 48 24.078016285486957 24.189111408305262 30.41477628616411 21.318096020043676 49 22.601720810550017 24.141657920130015 29.945372941037057 23.311248328282915 50 20.1526023768008 33.47301340759425 24.724960217365542 21.649423998239406 51 19.535654128083156 34.527253220700516 22.848828105161587 23.08826454605475 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1209.0 1 1995.0 2 2781.0 3 6468.0 4 10155.0 5 7880.0 6 5605.0 7 6040.0 8 6475.0 9 6945.5 10 7416.0 11 7667.0 12 7918.0 13 7781.5 14 7645.0 15 7304.0 16 6963.0 17 6763.5 18 6564.0 19 7028.5 20 7493.0 21 7322.0 22 7151.0 23 6795.5 24 6440.0 25 9275.0 26 13204.0 27 14298.0 28 18270.0 29 22242.0 30 23286.5 31 24331.0 32 29117.5 33 33904.0 34 37769.5 35 41635.0 36 43278.0 37 44921.0 38 57728.5 39 70536.0 40 100079.5 41 129623.0 42 155898.5 43 182174.0 44 185051.5 45 187929.0 46 181945.0 47 175961.0 48 156458.5 49 136956.0 50 129697.0 51 122438.0 52 113414.0 53 104390.0 54 99876.5 55 95363.0 56 88875.0 57 82387.0 58 81825.0 59 81263.0 60 75521.0 61 69779.0 62 62387.5 63 54996.0 64 45935.0 65 36874.0 66 31180.0 67 25486.0 68 21055.0 69 16624.0 70 15372.5 71 14121.0 72 12438.5 73 10756.0 74 9448.5 75 5806.5 76 3472.0 77 2653.0 78 1834.0 79 1587.0 80 1340.0 81 822.0 82 304.0 83 196.0 84 88.0 85 83.5 86 79.0 87 74.5 88 70.0 89 42.0 90 14.0 91 11.0 92 8.0 93 8.0 94 8.0 95 5.0 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1890272.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 16.504571080948217 #Duplication Level Percentage of deduplicated Percentage of total 1 81.6446229077022 13.47509482157384 2 7.389466894077031 2.4391996320721603 3 2.372622057628167 1.1747732819504908 4 1.1437904498196134 0.7551108312303018 5 0.6751671987963309 0.5571672512029369 6 0.47074390017800855 0.46616556968464395 7 0.3019270550017424 0.34882235783763343 8 0.2479857906017578 0.32743192864414816 9 0.1888475494562746 0.28051630231175717 >10 2.367922768642823 9.702566896901226 >50 1.3094064026970542 15.812787450691287 >100 1.8757855650552675 52.53919183447668 >500 0.008783595257802874 0.8887702498626332 >1k 0.002277228400171116 0.6324964383121984 >5k 6.50636685763176E-4 0.5999051532480638 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 5806 0.30715156337289024 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5367 0.2839273924599211 No Hit AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 2969 0.15706734268930608 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.03475690271029778 0.0 2 0.0 0.0 0.0 0.12410912291987608 0.0 3 0.0 0.0 0.0 0.1862694892586887 0.0 4 0.0 0.0 0.0 0.31455790489411045 0.0 5 0.0 0.0 0.0 0.5219883699277141 0.0 6 0.0 0.0 0.0 0.7398935179699007 0.0 7 0.0 0.0 0.0 0.854850518867126 0.0 8 0.0 0.0 0.0 1.1039681061773121 0.0 9 0.0 0.0 0.0 1.186284301941731 0.0 10 0.0 0.0 0.0 1.3289092786646577 0.0 11 0.0 0.0 0.0 1.520627719185387 0.0 12 0.0 0.0 0.0 1.6676965008210458 0.0 13 0.0 0.0 0.0 1.7342477696331533 0.0 14 0.0 0.0 0.0 1.761439623503919 0.0 15 0.0 0.0 0.0 1.80159257503682 0.0 16 0.0 0.0 0.0 1.8916854293985204 0.0 17 0.0 0.0 0.0 1.993787137512485 0.0 18 0.0 0.0 0.0 2.1310689678522454 5.290243943728733E-5 19 0.0 0.0 0.0 2.1982550659376003 5.290243943728733E-5 20 0.0 0.0 0.0 2.2609973591102235 5.290243943728733E-5 21 0.0 0.0 0.0 2.348709603697246 5.290243943728733E-5 22 0.0 0.0 0.0 2.4344644580250883 5.290243943728733E-5 23 0.0 0.0 0.0 2.540057727141914 5.290243943728733E-5 24 0.0 0.0 0.0 2.620733947283777 5.290243943728733E-5 25 0.0 0.0 0.0 2.6839523624113357 5.290243943728733E-5 26 0.0 0.0 0.0 2.7524610214826226 5.290243943728733E-5 27 0.0 0.0 0.0 2.8155736317313065 5.290243943728733E-5 28 0.0 0.0 0.0 2.8809081444363565 5.290243943728733E-5 29 0.0 0.0 0.0 2.9578811938176095 5.290243943728733E-5 30 0.0 0.0 0.0 3.0595067799766382 5.290243943728733E-5 31 0.0 0.0 0.0 3.1542550490088197 5.290243943728733E-5 32 0.0 0.0 0.0 3.2431311472634627 5.290243943728733E-5 33 5.290243943728733E-5 0.0 0.0 3.3254473430278817 5.290243943728733E-5 34 5.290243943728733E-5 0.0 0.0 3.412630563220531 5.290243943728733E-5 35 5.290243943728733E-5 0.0 0.0 3.527693368996631 5.290243943728733E-5 36 1.0580487887457466E-4 0.0 0.0 3.626303516107735 5.290243943728733E-5 37 1.0580487887457466E-4 0.0 0.0 3.723379492475157 5.290243943728733E-5 38 1.0580487887457466E-4 0.0 0.0 3.8158000541720978 5.290243943728733E-5 39 1.0580487887457466E-4 0.0 0.0 3.9089083475817237 5.290243943728733E-5 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTTTAGT 20 7.034441E-4 45.000004 15 ATTACGC 20 7.034441E-4 45.000004 11 CGTTCGA 20 7.034441E-4 45.000004 14 TACGACC 20 7.034441E-4 45.000004 20 CGCACAT 20 7.034441E-4 45.000004 35 CCACGAA 20 7.034441E-4 45.000004 25 GCGTATC 20 7.034441E-4 45.000004 13 TACGTCA 40 6.8193913E-9 45.000004 29 CTATGCG 35 1.2124838E-7 45.0 1 CGTATAA 35 1.2124838E-7 45.0 30 TAGGTTA 25 3.8917646E-5 45.0 20 TCTAGCG 45 3.8562575E-10 45.0 1 CATAGGT 35 1.2124838E-7 45.0 26 TATTACG 35 1.2124838E-7 45.0 1 CGTACTT 25 3.8917646E-5 45.0 13 ACGAGTT 25 3.8917646E-5 45.0 34 ATCGATT 50 2.1827873E-11 45.0 42 GTACGAT 45 3.8562575E-10 45.0 9 TTGATCG 30 2.1662472E-6 44.999996 17 CGCATCG 60 0.0 44.999996 21 >>END_MODULE