##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546267_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2292896 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.25444459757442 31.0 31.0 33.0 30.0 34.0 2 31.505962764992393 31.0 31.0 34.0 30.0 34.0 3 31.57860844975088 31.0 31.0 34.0 30.0 34.0 4 35.33783041184598 37.0 35.0 37.0 33.0 37.0 5 35.06778283882043 37.0 35.0 37.0 32.0 37.0 6 35.200145580087366 37.0 35.0 37.0 32.0 37.0 7 35.7298996552831 37.0 35.0 37.0 35.0 37.0 8 35.80131196530501 37.0 35.0 37.0 35.0 37.0 9 37.53942263408371 39.0 37.0 39.0 35.0 39.0 10 36.86851039035351 39.0 37.0 39.0 32.0 39.0 11 36.5111810566201 39.0 35.0 39.0 32.0 39.0 12 35.48339828758042 37.0 35.0 39.0 31.0 39.0 13 34.926796069250415 37.0 34.0 39.0 29.0 39.0 14 35.8592103610456 38.0 34.0 40.0 29.0 41.0 15 36.19293548420862 38.0 35.0 40.0 30.0 41.0 16 36.38375835624468 38.0 35.0 40.0 31.0 41.0 17 36.3251538665513 37.0 35.0 40.0 31.0 41.0 18 36.29364567778041 37.0 35.0 40.0 31.0 41.0 19 36.19980321828814 37.0 35.0 40.0 31.0 41.0 20 36.13156898524835 37.0 35.0 40.0 31.0 41.0 21 35.95756937950958 37.0 34.0 40.0 30.0 41.0 22 35.82715395726627 36.0 34.0 40.0 30.0 41.0 23 35.84395672546858 36.0 34.0 40.0 30.0 41.0 24 35.73063409766514 36.0 34.0 40.0 30.0 41.0 25 35.58266576416898 36.0 34.0 40.0 30.0 41.0 26 35.50999042259222 36.0 34.0 40.0 30.0 41.0 27 35.432747058741434 36.0 34.0 40.0 29.0 41.0 28 35.42882363613526 36.0 34.0 40.0 29.0 41.0 29 35.48327966030732 36.0 34.0 40.0 30.0 41.0 30 35.41603980293917 36.0 34.0 40.0 29.0 41.0 31 35.276804094036535 36.0 34.0 40.0 29.0 41.0 32 35.10158725035937 35.0 34.0 40.0 29.0 41.0 33 34.946428882949775 36.0 34.0 40.0 27.0 41.0 34 34.808493712754526 35.0 34.0 40.0 27.0 41.0 35 34.63636423108593 35.0 33.0 40.0 26.0 41.0 36 34.447103139435896 35.0 33.0 40.0 25.0 41.0 37 34.337426555761795 35.0 33.0 40.0 24.0 41.0 38 34.328146152289506 35.0 33.0 40.0 25.0 41.0 39 34.29065731720933 35.0 33.0 40.0 24.0 41.0 40 34.12098106499379 35.0 33.0 40.0 23.0 41.0 41 34.07096833000712 35.0 33.0 40.0 23.0 41.0 42 34.03869953107337 35.0 33.0 40.0 24.0 41.0 43 33.96449075753981 35.0 33.0 40.0 24.0 41.0 44 33.75154389906913 35.0 33.0 39.0 23.0 41.0 45 33.72598103010341 35.0 33.0 39.0 23.0 41.0 46 33.692013942193626 35.0 33.0 39.0 23.0 41.0 47 33.65552209956317 35.0 33.0 39.0 23.0 41.0 48 33.57251135681688 35.0 33.0 39.0 23.0 41.0 49 33.505164647677 35.0 32.0 39.0 24.0 41.0 50 33.41716676203369 35.0 32.0 39.0 24.0 40.0 51 33.32502389990649 35.0 32.0 38.0 24.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 0.0 11 0.0 12 3.0 13 2.0 14 27.0 15 88.0 16 280.0 17 648.0 18 1561.0 19 2848.0 20 4723.0 21 7691.0 22 11424.0 23 15943.0 24 22314.0 25 31113.0 26 39582.0 27 46598.0 28 52094.0 29 60315.0 30 72063.0 31 88164.0 32 108652.0 33 141430.0 34 243850.0 35 353619.0 36 159093.0 37 193327.0 38 263349.0 39 371886.0 40 208.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.711030940784056 25.122683279136954 29.6553354360599 14.510950344019092 2 29.652500593136367 26.726942696049015 30.881644871812764 12.738911839001856 3 28.926562739871326 25.6926175456715 31.056402034806634 14.324417679650539 4 26.28501249075405 27.41044513139715 30.622234937825354 15.682307440023447 5 23.622397178066514 32.494059913750995 29.72851799645514 14.15502491172735 6 22.45095285612605 40.36903549048888 26.25278250736187 10.927229146023196 7 86.49349992324117 5.280658172023502 6.19155862280714 2.034283281928182 8 88.66128250038379 3.998044394512442 5.702526412013454 1.6381466930903101 9 84.73118711010007 5.284147209467852 7.054441195762913 2.9302244846691696 10 55.230546871729025 20.883023041603284 12.277966379635185 11.608463707032504 11 49.42823398880717 19.730157844053984 17.907353844221458 12.934254322917393 12 42.81489435194619 21.690866048874437 21.962487613917073 13.531751985262305 13 21.956338185421405 40.576066249842995 22.753757693327564 14.713837871408037 14 15.637604147767714 42.83491270428314 27.38170418544932 14.145778962499826 15 15.032866732725775 21.855897519992183 48.511096883591755 14.600138863690285 16 17.04045887820468 16.915246046920576 46.45810363836825 19.586191436506496 17 17.62199419424169 17.65252327187975 28.495535776589954 36.2299467572886 18 23.12721553877716 22.430323922236333 32.56741692601845 21.875043612968053 19 30.83772661298201 23.39286212719635 24.766670620909103 21.002740638912538 20 32.56959757442117 23.156174549565268 23.377859266185645 20.89636860982792 21 23.518162184416564 27.045927944398702 27.326228490084155 22.109681381100582 22 23.32024653538582 24.88787105913221 25.131013356035336 26.66086904944664 23 20.801990146958257 29.59231469722133 24.128438446401407 25.477256709419006 24 21.172656762452373 23.837409110574576 36.52926255704576 18.46067156992729 25 18.549903702566535 23.941862169064798 34.84440637516922 22.66382775319945 26 17.86600875050591 33.53326971655059 26.598546118096937 22.002175414846555 27 19.672327048413884 32.31476700207946 28.523753366921134 19.48915258258552 28 16.66072076535525 28.6819812150224 36.93176663921957 17.725531380402774 29 17.156687438069586 25.648350383096314 35.73214833991599 21.46281383891812 30 20.05276296875218 29.459120692783276 30.77959052656553 19.708525811899015 31 30.209132904414332 25.648612060904636 23.944217269339735 20.198037765341297 32 31.358552677487335 26.05172672463121 25.43813587707423 17.15158472080722 33 29.088017947608613 26.13729536795389 24.35923827334515 20.41544841109235 34 21.053375294823663 27.66553738154718 27.74822756897827 23.532859754650886 35 22.70225077805535 24.75158053396229 29.77910903939821 22.767059648584148 36 31.54591398824892 24.658074330453715 25.11051526104978 18.68549642024758 37 22.11155673872692 31.690447364381114 27.29338792513921 18.904607971752753 38 21.94848785117162 33.103376690438644 22.030044101433297 22.918091356956445 39 22.35413206704534 30.083440330481626 26.437570653008247 21.12485694946478 40 24.341618634251184 25.28392042203397 24.813031205950903 25.561429737763948 41 18.83487083583381 24.09982833935774 26.790574016440345 30.274726808368108 42 23.36516789248182 25.53761705720626 23.969251113002947 27.127963937308973 43 23.48331542294112 26.017883061421017 25.32570164543006 25.173099870207803 44 21.22507955005373 30.16059167096981 27.264777818095542 21.34955096088091 45 19.11490970371094 36.15157425369489 22.12019210640169 22.613323936192483 46 23.381479142534157 31.91588279625417 24.86065656706628 19.841981494145394 47 23.513888113547235 27.069042817467516 26.101358282277086 23.315710786708163 48 25.479350131885614 23.122854241971723 29.24266953232942 22.155126093813237 49 22.46739494508255 23.407472471494565 31.059629394442663 23.065503188980223 50 20.793878134900144 32.67326559948641 25.13951788480594 21.393338380807503 51 20.021797761433575 33.95801641243214 23.078935983140973 22.941249842993315 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1202.0 1 2011.0 2 2820.0 3 7535.0 4 12250.0 5 9367.5 6 6485.0 7 7082.0 8 7679.0 9 8484.0 10 9289.0 11 9268.5 12 9248.0 13 9263.0 14 9278.0 15 9070.0 16 8862.0 17 8333.5 18 7805.0 19 7327.5 20 6850.0 21 7253.5 22 7657.0 23 8817.0 24 9977.0 25 10356.5 26 14095.5 27 17455.0 28 22168.5 29 26882.0 30 29989.5 31 33097.0 32 33416.0 33 33735.0 34 40052.5 35 46370.0 36 48645.0 37 50920.0 38 68617.0 39 86314.0 40 119830.0 41 153346.0 42 187909.0 43 222472.0 44 224350.0 45 226228.0 46 216064.0 47 205900.0 48 192686.5 49 179473.0 50 166752.0 51 154031.0 52 144085.5 53 134140.0 54 124248.5 55 114357.0 56 109786.0 57 105215.0 58 100944.5 59 96674.0 60 91337.0 61 86000.0 62 75265.5 63 64531.0 64 55466.0 65 46401.0 66 39640.5 67 32880.0 68 27788.0 69 22696.0 70 19818.5 71 16941.0 72 14539.5 73 12138.0 74 9419.5 75 5339.0 76 3977.0 77 3071.5 78 2166.0 79 1689.5 80 1213.0 81 772.5 82 332.0 83 226.0 84 120.0 85 75.5 86 31.0 87 18.5 88 6.0 89 5.0 90 4.0 91 4.0 92 4.0 93 5.5 94 7.0 95 3.5 96 0.0 97 0.0 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2292896.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 16.269327988914032 #Duplication Level Percentage of deduplicated Percentage of total 1 81.93759902655336 13.330696731871194 2 7.091355189214182 2.3074316691842607 3 2.3059996727857475 1.1255119505663929 4 1.137691344296989 0.7403789452206492 5 0.669695305966771 0.5447746292704766 6 0.46248448156993366 0.45145870322664705 7 0.31087824103101663 0.35404460475651967 8 0.25873620914355067 0.3367571399331747 9 0.19004988812463788 0.2782785567740536 >10 2.353535306122628 9.515081656112063 >50 1.2946534966902667 15.60270925102316 >100 1.977546789152006 53.68100152167826 >500 0.008417403606013996 0.8257813654902958 >1k 8.145874457432901E-4 0.289794348559158 >5k 5.430582971621933E-4 0.6162989263336605 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 7483 0.32635583995087436 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6468 0.2820886773756856 No Hit AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 3435 0.1498105452667718 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.016790992700933666 0.0 2 0.0 0.0 0.0 0.06650977628291907 0.0 3 0.0 0.0 0.0 0.11042803511367284 0.0 4 0.0 0.0 0.0 0.1932054484808731 0.0 5 0.0 0.0 0.0 0.3301065552035504 0.0 6 0.0 0.0 0.0 0.47830342065231046 0.0 7 0.0 0.0 0.0 0.5701959443428747 0.0 8 0.0 0.0 0.0 0.7732579236040361 0.0 9 0.0 0.0 0.0 0.8634931545085341 0.0 10 0.0 0.0 0.0 1.0113847291809135 0.0 11 0.0 0.0 0.0 1.1744536167362147 0.0 12 4.361296805437316E-5 0.0 0.0 1.3134045329574477 0.0 13 8.722593610874632E-5 0.0 0.0 1.3718022971822534 0.0 14 8.722593610874632E-5 0.0 0.0 1.3921259402955912 0.0 15 1.3083890416311947E-4 0.0 0.0 1.4230475346461418 0.0 16 1.3083890416311947E-4 0.0 0.0 1.4968842895621957 0.0 17 1.3083890416311947E-4 0.0 0.0 1.5783969268558191 0.0 18 1.3083890416311947E-4 0.0 0.0 1.6968497480914966 0.0 19 1.3083890416311947E-4 0.0 0.0 1.750188408021995 0.0 20 1.3083890416311947E-4 0.0 0.0 1.8053151996427226 0.0 21 1.3083890416311947E-4 0.0 0.0 1.8801986657920813 0.0 22 1.3083890416311947E-4 0.0 0.0 1.953555678059537 0.0 23 1.3083890416311947E-4 0.0 0.0 2.0365075432989546 0.0 24 1.3083890416311947E-4 0.0 0.0 2.0991357654250344 0.0 25 1.3083890416311947E-4 0.0 0.0 2.1477206118376064 0.0 26 1.3083890416311947E-4 0.0 0.0 2.2044610832763456 0.0 27 1.7445187221749265E-4 0.0 0.0 2.256753031973539 0.0 28 1.7445187221749265E-4 0.0 0.0 2.3118362106262125 0.0 29 1.7445187221749265E-4 0.0 0.0 2.3725018491898453 0.0 30 1.7445187221749265E-4 0.0 0.0 2.450743513879391 0.0 31 1.7445187221749265E-4 0.0 0.0 2.529159630441154 0.0 32 1.7445187221749265E-4 0.0 0.0 2.5980681199670634 0.0 33 1.7445187221749265E-4 0.0 0.0 2.6691136449276374 0.0 34 1.7445187221749265E-4 0.0 0.0 2.7458724687033342 0.0 35 1.7445187221749265E-4 0.0 0.0 2.8366310552244847 0.0 36 1.7445187221749265E-4 0.0 0.0 2.9162247219237156 0.0 37 1.7445187221749265E-4 0.0 0.0 2.999351039035351 0.0 38 1.7445187221749265E-4 0.0 0.0 3.075673733130504 0.0 39 1.7445187221749265E-4 0.0 0.0 3.1561396591908224 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTATAA 25 3.892024E-5 45.000004 26 AATGCGC 25 3.892024E-5 45.000004 22 CTACGAT 25 3.892024E-5 45.000004 43 CGGTACC 25 3.892024E-5 45.000004 14 GTGCGTA 25 3.892024E-5 45.000004 29 TCTACGT 20 7.0347585E-4 45.0 12 TTACGTC 20 7.0347585E-4 45.0 13 GCGTAAT 35 1.2126293E-7 45.0 31 CGTCGAT 30 2.166451E-6 44.999996 31 GTACGTC 30 2.166451E-6 44.999996 29 TACGTCA 30 2.166451E-6 44.999996 30 GCGATAT 215 0.0 43.95349 9 CTATACG 110 0.0 42.954544 1 TATAGCG 95 0.0 42.63158 1 TAGTACG 160 0.0 42.1875 1 ACGCTAG 70 0.0 41.785713 1 CGTTTTT 6270 0.0 41.590908 1 GCTAACG 65 0.0 41.53846 1 CTAATGC 60 3.6379788E-12 41.249996 20 CGACGGT 255 0.0 40.588234 28 >>END_MODULE