SRR1546266_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546266_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2228951
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	5816	0.2609299172570415	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5287	0.23719678000996883	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	3431	0.1539289109540766	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2493	0.111846334890269	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2337	0.1048475269308298	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTACCGA	20	7.0347136E-4	45.000004	32
CGAACCG	20	7.0347136E-4	45.000004	21
CGCGATC	20	7.0347136E-4	45.000004	44
GTTCGGA	40	6.8193913E-9	45.000004	36
CGATCAT	40	6.8193913E-9	45.000004	35
ACGACAC	20	7.0347136E-4	45.000004	23
TACCGGT	20	7.0347136E-4	45.000004	40
TGTCCGA	40	6.8193913E-9	45.000004	27
TCGTTAC	25	3.8919894E-5	45.0	39
CAACGAC	55	1.8189894E-12	45.0	12
ACGTTAC	35	1.2126111E-7	45.0	24
CTATACG	35	1.2126111E-7	45.0	1
TATTCGA	55	1.8189894E-12	45.0	37
TATTCCG	25	3.8919894E-5	45.0	24
GCGATAC	90	0.0	45.0	9
GTATACG	50	2.1827873E-11	45.0	1
CGTCGGT	25	3.8919894E-5	45.0	41
ATACCTA	25	3.8919894E-5	45.0	45
AATCGTC	25	3.8919894E-5	45.0	38
AACCGTA	30	2.1664237E-6	44.999996	39