##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546266_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2228951 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.2617975899874 31.0 31.0 33.0 30.0 34.0 2 31.488861352268398 31.0 31.0 34.0 30.0 34.0 3 31.58709455703602 31.0 31.0 34.0 30.0 34.0 4 35.3388804868299 37.0 35.0 37.0 33.0 37.0 5 35.05040218470482 37.0 35.0 37.0 32.0 37.0 6 35.18825985856127 37.0 35.0 37.0 32.0 37.0 7 35.72648434173744 37.0 35.0 37.0 35.0 37.0 8 35.795007158075705 37.0 35.0 37.0 35.0 37.0 9 37.54272121729011 39.0 37.0 39.0 35.0 39.0 10 36.87226367919259 39.0 37.0 39.0 32.0 39.0 11 36.50278000727697 39.0 35.0 39.0 32.0 39.0 12 35.34906779018471 37.0 35.0 39.0 30.0 39.0 13 34.70619766876885 37.0 33.0 39.0 27.0 39.0 14 35.61105336097563 37.0 34.0 40.0 27.0 41.0 15 35.98543171204751 37.0 34.0 40.0 30.0 41.0 16 36.19847318312516 37.0 35.0 40.0 31.0 41.0 17 36.157165410993784 37.0 34.0 40.0 31.0 41.0 18 36.13430936794932 37.0 35.0 40.0 31.0 41.0 19 36.066678002342805 37.0 35.0 40.0 31.0 41.0 20 35.99830637820212 36.0 34.0 40.0 31.0 41.0 21 35.79657560888508 36.0 34.0 40.0 30.0 41.0 22 35.676315450631265 36.0 34.0 40.0 30.0 41.0 23 35.70217425147525 36.0 34.0 40.0 30.0 41.0 24 35.56662663288695 35.0 34.0 40.0 30.0 41.0 25 35.43049712622664 35.0 34.0 40.0 30.0 41.0 26 35.35936321614966 35.0 34.0 40.0 29.0 41.0 27 35.29889979636161 35.0 34.0 40.0 29.0 41.0 28 35.27535149942731 36.0 34.0 40.0 29.0 41.0 29 35.354495006844026 36.0 34.0 40.0 29.0 41.0 30 35.280222400582154 36.0 34.0 40.0 29.0 41.0 31 35.148518742673126 35.0 34.0 40.0 29.0 41.0 32 34.95584066226669 35.0 34.0 40.0 29.0 41.0 33 34.799450952488414 35.0 34.0 40.0 27.0 41.0 34 34.70092613072248 35.0 34.0 40.0 27.0 41.0 35 34.5307761363978 35.0 33.0 40.0 26.0 41.0 36 34.36306854659434 35.0 33.0 40.0 25.0 41.0 37 34.28754288452281 35.0 33.0 40.0 24.0 41.0 38 34.285932261409066 35.0 33.0 40.0 25.0 41.0 39 34.226856041249896 35.0 33.0 40.0 24.0 41.0 40 34.03822964255383 35.0 33.0 40.0 23.0 41.0 41 34.01485766174312 35.0 33.0 40.0 24.0 41.0 42 33.9797106351822 35.0 33.0 39.0 24.0 41.0 43 33.92343348956527 35.0 33.0 39.0 24.0 41.0 44 33.7176878271438 35.0 33.0 39.0 23.0 41.0 45 33.701362210295336 35.0 33.0 39.0 23.0 41.0 46 33.68331695043992 35.0 33.0 39.0 23.0 41.0 47 33.636942220802524 35.0 33.0 39.0 23.0 41.0 48 33.564503661139256 35.0 33.0 39.0 23.0 41.0 49 33.51847124499372 35.0 33.0 39.0 24.0 41.0 50 33.40171452849345 35.0 32.0 39.0 24.0 40.0 51 33.31463993600577 35.0 32.0 38.0 24.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 3.0 13 7.0 14 30.0 15 88.0 16 264.0 17 665.0 18 1499.0 19 2794.0 20 4725.0 21 7694.0 22 11384.0 23 15998.0 24 22109.0 25 29907.0 26 38274.0 27 45537.0 28 51254.0 29 60199.0 30 71599.0 31 87761.0 32 109089.0 33 142486.0 34 250468.0 35 356489.0 36 148348.0 37 175359.0 38 240364.0 39 354335.0 40 221.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.173990814513196 24.23413525016925 28.59309154844588 13.998782386871673 2 28.342525250667244 27.0357221850099 30.788653496644834 13.833099067678024 3 30.20555409248566 25.68907975096806 30.476443851838823 13.62892230470746 4 27.608502833844263 27.947630970801963 29.643989482047832 14.799876713305945 5 24.891619420974262 32.85953796202788 28.69704179230499 13.551800824692872 6 22.709561583004742 40.32511257537739 25.928115961275054 11.037209880342816 7 86.70989178317512 5.565487980668934 5.873525259191431 1.8510949769645002 8 88.81280925421868 4.089233006916706 5.069649355234817 2.0283083836297884 9 84.82304007580247 5.574101898157474 6.948066601733281 2.6547914243067705 10 57.43154515285441 21.3587019185258 11.060404647746855 10.14934828087293 11 52.93211918969954 19.605096747304003 16.00578029754804 11.45700376544841 12 46.53175417494597 21.98321093644499 19.4016826749444 12.083352213664634 13 23.383017392486423 41.60746467733028 20.695475136061763 14.31404279412154 14 15.563599199802958 44.784205664458305 24.606328268319942 15.0458668674188 15 14.90373722885788 23.429676112216015 48.4313473019371 13.235239356989007 16 16.918945279640514 17.741305214874618 46.60048605823995 18.739263447244912 17 16.833075289676625 18.88543085962859 27.05402675967305 37.227467091021744 18 22.299144305998652 24.842807221872533 31.414643031632366 21.44340544049645 19 31.500378429135502 24.47783733244921 23.95211918072672 20.06966505768857 20 34.99547545011084 23.088932865729213 22.1535601276116 19.762031556548347 21 24.987090339805583 27.969614406059172 25.6921753775655 21.35111987656974 22 23.198580857093763 25.862210519657005 23.790024993819962 27.14918362942927 23 21.950146055252 30.46774020604311 22.977938949757082 24.604174788947805 24 22.591793179841098 23.602447967676273 35.756416359085506 18.04934249339712 25 19.446008458687515 24.323639236573616 33.91725524697492 22.313097057763944 26 17.18283623103424 36.289267911228194 26.473350019807523 20.05454583793004 27 20.19689979725889 33.96261290625052 27.26026727370857 18.58022002278202 28 16.028167510187526 29.546140763076444 37.32361097215686 17.10208075457917 29 17.290779384562512 25.221236357371694 36.75549619529546 20.732488062770337 30 20.24535308313193 29.509845662825246 30.234940113084583 20.009861140958236 31 30.178052366337347 27.003330266120702 22.757790548109853 20.0608268194321 32 31.966741305663515 27.5520188644793 23.827755746985915 16.65348408287127 33 29.400960362071665 28.263115698819757 23.010061683724768 19.32586225538381 34 20.979061450879808 28.72467811091406 26.786187762763742 23.510072675442395 35 21.097682272961585 25.950951815450406 29.866964325370994 23.084401586217016 36 30.23790114722127 25.70460274810886 25.17031554305142 18.887180561618447 37 22.076393783443425 32.54136138479491 26.935585394205614 18.44665943755605 38 22.496187668549016 33.436446112992165 21.40226501165795 22.665101206800866 39 22.00398303955538 32.14552495770432 25.013201277192724 20.83729072554758 40 24.99422374022578 26.368771677798208 24.40874653592654 24.228258046049465 41 17.919640225379563 25.060532959226112 26.638764154079652 30.381062661314672 42 24.34328973584435 26.396183675639346 21.97464188311004 27.285884705406264 43 23.76759291702689 27.153445724019953 23.339992669197304 25.738968689755854 44 21.17125948484287 31.283819159775163 26.415789310756495 21.129132044625475 45 18.57981624539974 36.927236175223236 21.293738624133056 23.199208955243968 46 22.341182017908874 33.643449317638655 23.732598877229695 20.28276978722278 47 23.36229015352962 27.43447478208359 25.61025343311719 23.5929816312696 48 24.833610070387373 22.930966180952385 29.596164294325 22.639259454335246 49 21.74583469982068 23.82721737714288 30.114210675784257 24.312737247252183 50 19.382211632288012 32.485415785272984 26.476041869022694 21.65633071341631 51 18.924956178937986 34.80780869565997 23.062956520802835 23.204278604599203 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1140.0 1 2181.5 2 3223.0 3 7051.5 4 10880.0 5 8625.0 6 6370.0 7 6772.0 8 7174.0 9 7487.0 10 7800.0 11 7938.0 12 8076.0 13 7981.5 14 7887.0 15 7639.0 16 7391.0 17 7346.5 18 7302.0 19 7122.5 20 6943.0 21 6908.5 22 6874.0 23 8363.0 24 9852.0 25 10017.0 26 12102.5 27 14023.0 28 19640.0 29 25257.0 30 27873.5 31 30490.0 32 38420.0 33 46350.0 34 45869.5 35 45389.0 36 48114.5 37 50840.0 38 63580.0 39 76320.0 40 117310.0 41 158300.0 42 185804.5 43 213309.0 44 220579.5 45 227850.0 46 210697.0 47 193544.0 48 183409.5 49 173275.0 50 161873.0 51 150471.0 52 140029.0 53 129587.0 54 118949.0 55 108311.0 56 104788.5 57 101266.0 58 100477.0 59 99688.0 60 92582.5 61 85477.0 62 74618.5 63 63760.0 64 52535.5 65 41311.0 66 35913.0 67 30515.0 68 25543.0 69 20571.0 70 17931.0 71 15291.0 72 13063.5 73 10836.0 74 8935.5 75 5309.5 76 3584.0 77 3038.5 78 2493.0 79 2082.5 80 1672.0 81 1091.0 82 510.0 83 451.0 84 392.0 85 224.0 86 56.0 87 57.0 88 58.0 89 39.0 90 20.0 91 11.5 92 3.0 93 3.0 94 3.0 95 1.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2228951.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 15.226241443396408 #Duplication Level Percentage of deduplicated Percentage of total 1 81.58669937861501 12.422587833085917 2 8.075944267813728 2.459325546102901 3 2.5628119489508774 1.1706598052624213 4 1.1691947844977248 0.7120976833248877 5 0.6542505847074733 0.4980888683619631 6 0.4043066127872109 0.3693642062075913 7 0.2914740406879438 0.31066378825978863 8 0.2055805214825985 0.25041749249227097 9 0.16296233761747056 0.22331735088694987 >10 1.8815987426441545 7.00518965040947 >50 1.0082039350630014 11.360310346612046 >100 1.9721564435539714 59.9169788020009 >500 0.02152748088778849 2.0427686134382994 >1k 0.0026909351109735613 0.7527618957278037 >5k 5.97985580216347E-4 0.5054681178267798 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 5816 0.2609299172570415 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5287 0.23719678000996883 No Hit AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 3431 0.1539289109540766 No Hit AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 2493 0.111846334890269 No Hit AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 2337 0.1048475269308298 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.02812982429851531 0.0 2 0.0 0.0 0.0 0.09093963931912366 0.0 3 0.0 0.0 0.0 0.13221466061838058 0.0 4 0.0 0.0 0.0 0.23885675369265633 0.0 5 0.0 0.0 0.0 0.3916640608070792 0.0 6 0.0 0.0 0.0 0.5628656708918232 0.0 7 0.0 0.0 0.0 0.6656045826041039 0.0 8 0.0 0.0 0.0 0.9211059372772215 0.0 9 0.0 0.0 0.0 1.0014127721964279 0.0 10 0.0 0.0 0.0 1.1499131205665805 0.0 11 0.0 0.0 0.0 1.29693295186839 0.0 12 0.0 0.0 0.0 1.434037805227661 0.0 13 0.0 0.0 0.0 1.485945630926835 0.0 14 0.0 0.0 0.0 1.503756699900536 0.0 15 0.0 0.0 0.0 1.5358345697146325 0.0 16 0.0 0.0 0.0 1.6075723512988846 0.0 17 0.0 0.0 0.0 1.6905261712796738 0.0 18 0.0 0.0 0.0 1.8213051789832975 0.0 19 0.0 0.0 0.0 1.8737065103719193 0.0 20 0.0 0.0 0.0 1.934766623402668 0.0 21 0.0 0.0 0.0 2.0189766396838693 0.0 22 0.0 0.0 0.0 2.1023342370469336 0.0 23 0.0 0.0 0.0 2.1993305371001877 0.0 24 4.486415358614882E-5 0.0 0.0 2.268780246851546 0.0 25 4.486415358614882E-5 0.0 0.0 2.3271036465135393 0.0 26 4.486415358614882E-5 0.0 0.0 2.391483706909663 0.0 27 8.972830717229764E-5 0.0 0.0 2.4467563441277984 0.0 28 8.972830717229764E-5 0.0 0.0 2.508758604383856 0.0 29 8.972830717229764E-5 0.0 0.0 2.5731386647799797 0.0 30 8.972830717229764E-5 0.0 0.0 2.663674526716828 0.0 31 8.972830717229764E-5 0.0 0.0 2.7581584341692573 0.0 32 8.972830717229764E-5 0.0 0.0 2.834876136801572 0.0 33 8.972830717229764E-5 0.0 0.0 2.9138819112667798 0.0 34 8.972830717229764E-5 0.0 0.0 2.9938298329572968 0.0 35 8.972830717229764E-5 0.0 0.0 3.098767088195299 0.0 36 1.3459246075844645E-4 0.0 0.0 3.19603257317007 0.0 37 1.3459246075844645E-4 0.0 0.0 3.2893051484756732 0.0 38 1.3459246075844645E-4 0.0 0.0 3.3804691085627274 0.0 39 1.3459246075844645E-4 0.0 0.0 3.4721265743392293 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTACCGA 20 7.0347136E-4 45.000004 32 CGAACCG 20 7.0347136E-4 45.000004 21 CGCGATC 20 7.0347136E-4 45.000004 44 GTTCGGA 40 6.8193913E-9 45.000004 36 CGATCAT 40 6.8193913E-9 45.000004 35 ACGACAC 20 7.0347136E-4 45.000004 23 TACCGGT 20 7.0347136E-4 45.000004 40 TGTCCGA 40 6.8193913E-9 45.000004 27 TCGTTAC 25 3.8919894E-5 45.0 39 CAACGAC 55 1.8189894E-12 45.0 12 ACGTTAC 35 1.2126111E-7 45.0 24 CTATACG 35 1.2126111E-7 45.0 1 TATTCGA 55 1.8189894E-12 45.0 37 TATTCCG 25 3.8919894E-5 45.0 24 GCGATAC 90 0.0 45.0 9 GTATACG 50 2.1827873E-11 45.0 1 CGTCGGT 25 3.8919894E-5 45.0 41 ATACCTA 25 3.8919894E-5 45.0 45 AATCGTC 25 3.8919894E-5 45.0 38 AACCGTA 30 2.1664237E-6 44.999996 39 >>END_MODULE