##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546265_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1124883 Sequences flagged as poor quality 0 Sequence length 50 %GC 39 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.916866909714166 31.0 31.0 34.0 30.0 34.0 2 32.27061036570026 33.0 31.0 34.0 30.0 34.0 3 32.18217716864776 33.0 31.0 34.0 30.0 34.0 4 35.93052166314185 37.0 35.0 37.0 35.0 37.0 5 35.92558159381909 37.0 35.0 37.0 35.0 37.0 6 35.988806835910935 37.0 35.0 37.0 35.0 37.0 7 36.208593249253475 37.0 35.0 37.0 35.0 37.0 8 36.10941137878339 37.0 35.0 37.0 35.0 37.0 9 37.905204363476024 39.0 38.0 39.0 35.0 39.0 10 37.53052895278887 39.0 37.0 39.0 35.0 39.0 11 37.30564867635123 39.0 37.0 39.0 34.0 39.0 12 36.606934232271264 39.0 35.0 39.0 33.0 39.0 13 36.352012609311366 39.0 35.0 39.0 33.0 39.0 14 37.46634983371604 40.0 35.0 41.0 33.0 41.0 15 37.69094741408662 40.0 35.0 41.0 33.0 41.0 16 37.831721165667894 40.0 35.0 41.0 34.0 41.0 17 37.74302571911923 40.0 35.0 41.0 34.0 41.0 18 37.57342674749285 39.0 36.0 41.0 34.0 41.0 19 37.31521233763867 38.0 35.0 41.0 34.0 41.0 20 37.02342999227475 38.0 35.0 41.0 33.0 41.0 21 36.911255659477476 38.0 35.0 41.0 33.0 41.0 22 36.82253887737658 38.0 35.0 41.0 33.0 41.0 23 36.76719801081535 37.0 35.0 41.0 33.0 41.0 24 36.699953684072035 37.0 35.0 41.0 33.0 41.0 25 36.677477568778265 37.0 35.0 41.0 33.0 41.0 26 36.6197266737963 37.0 35.0 41.0 33.0 41.0 27 36.53962234294589 37.0 35.0 41.0 33.0 41.0 28 36.46752328908873 37.0 35.0 41.0 32.0 41.0 29 36.39756934721211 37.0 35.0 41.0 32.0 41.0 30 36.15483476948269 37.0 35.0 41.0 31.0 41.0 31 35.80131178086965 37.0 35.0 41.0 30.0 41.0 32 35.404882996720545 37.0 35.0 41.0 29.0 41.0 33 34.966198262397064 37.0 35.0 41.0 24.0 41.0 34 34.48391521607136 37.0 34.0 40.0 21.0 41.0 35 34.24883298974204 37.0 34.0 40.0 18.0 41.0 36 34.04878551813833 36.0 34.0 40.0 18.0 41.0 37 34.011274061391276 37.0 34.0 40.0 18.0 41.0 38 33.980106375507496 36.0 34.0 40.0 18.0 41.0 39 33.91123610188793 36.0 34.0 40.0 18.0 41.0 40 33.77082861061995 36.0 34.0 40.0 18.0 41.0 41 33.687697298296804 36.0 34.0 40.0 16.0 41.0 42 33.59596331351794 36.0 34.0 40.0 15.0 41.0 43 33.46479500534722 36.0 33.0 40.0 15.0 41.0 44 33.319133634342414 35.0 33.0 40.0 15.0 41.0 45 33.29500045782539 35.0 33.0 40.0 15.0 41.0 46 33.20182276734558 35.0 33.0 40.0 15.0 41.0 47 33.19505317441903 35.0 33.0 40.0 15.0 41.0 48 33.147808260948025 35.0 33.0 40.0 14.0 41.0 49 33.066456689273465 36.0 33.0 40.0 13.0 41.0 50 32.87888073692997 35.0 33.0 40.0 12.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 1.0 11 1.0 12 3.0 13 3.0 14 9.0 15 14.0 16 50.0 17 190.0 18 446.0 19 855.0 20 1617.0 21 2692.0 22 4148.0 23 6849.0 24 11016.0 25 18344.0 26 28182.0 27 34180.0 28 32112.0 29 27740.0 30 26065.0 31 27760.0 32 33103.0 33 43133.0 34 83014.0 35 179575.0 36 56769.0 37 71681.0 38 122943.0 39 312387.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.074386402852564 22.704139008234634 28.00549034877405 21.215984240138752 2 35.59854669330055 22.856510410416018 30.091662866271424 11.45328003001201 3 25.739388007463887 23.11724863830283 39.77506994060715 11.368293413626128 4 22.39966289827475 25.418287946390873 40.165243852027274 12.0168053033071 5 20.18369910470689 29.52982665752794 38.804124517838744 11.482349719926429 6 17.247838219619286 40.007894154325385 34.591153035471244 8.153114590584087 7 79.29349096750506 3.3668390401490647 16.030378270451237 1.3092917218946325 8 79.91133300085431 2.600803816930294 15.544194373992672 1.9436688082227218 9 76.91537697698338 3.7340772329211127 16.99803446225074 2.3525113278447627 10 43.77193005850386 25.22404552295661 22.695338092939444 8.308686325600084 11 36.94339766891312 18.87156264251482 31.13479357408726 13.050246114484795 12 36.37151597099432 19.05095907752184 33.0815738170103 11.495951134473541 13 17.649479990363442 37.51972427354667 31.040028162928945 13.790767573160942 14 11.045504288001508 38.50044849108752 33.86147714917907 16.592570071731906 15 9.876049331352684 24.268835069958385 53.333102198184164 12.522013400504765 16 11.31851045842101 19.850242202966886 49.70374696746239 19.12750037114971 17 11.459414001278354 22.42393208893725 33.84467540179734 32.27197850798705 18 14.068929835369545 25.483539176963294 43.67316423130227 16.774366756364884 19 17.957867618232296 26.003148771916724 34.957235552497465 21.08174805735352 20 21.838715670874215 20.970180898813474 39.36773868926813 17.82336474104418 21 15.793998131361217 28.97456891072227 37.51305691347456 17.718376044441957 22 20.313223686374492 22.786369782457374 32.014707307337744 24.88569922383039 23 13.951317603697452 27.476546449719656 32.37296678854601 26.199169158036877 24 12.964548313024554 22.70369451756316 50.04840503412355 14.283352135288737 25 11.988446798467042 28.465627091884222 43.09790440428027 16.448021705368472 26 14.253660158434256 28.891182460753694 36.12331238004308 20.73184500076897 27 12.429648238972408 36.272483449389846 32.85123875105233 18.44662956058541 28 10.80512373286822 29.80078817085866 41.52325175151549 17.87083634475763 29 11.176184545414944 23.03110634617111 39.84609954990875 25.946609558505195 30 13.23782117784694 32.28566882066846 36.9369081051096 17.539601896375 31 19.28031626400257 33.62989750934097 30.508772912382888 16.581013314273573 32 20.129915733458503 24.819914604452194 35.006040628225335 20.044129033863967 33 20.75824774665454 30.829872973455906 30.262258385983255 18.1496208939063 34 15.42809341060359 27.885922358147468 32.4820447993258 24.203939431923143 35 17.263839883792357 26.41919204041665 34.39095443703923 21.926013638751762 36 24.741506450004135 28.758546444385775 30.54459886050371 15.955348245106379 37 15.676652594092008 31.68693988619261 36.727641896979506 15.908765622735876 38 15.169310941671268 29.739537356329503 35.30322709117304 19.787924610826195 39 16.292094377815292 30.79458041414085 34.74699146489012 18.166333743153732 40 18.105171826758873 26.85079248241817 33.38276069600127 21.66127499482168 41 13.692712931033716 28.059007025619554 34.28507675909406 23.963203284252675 42 16.48847035647263 26.961470659615266 31.22244713450199 25.327611849410115 43 17.206144994634997 26.819144746609204 32.76322959810042 23.211480660655376 44 14.480883789691907 28.145060419616975 32.42434991016844 24.949705880522686 45 14.470660504247999 37.738947072717785 27.602248411612585 20.18814401142163 46 19.548699731438738 32.112406356927785 31.829176901064375 16.5097170105691 47 15.808310730982688 30.17967201922333 33.3027523751359 20.709264874658075 48 15.911432566764722 28.485806968369154 35.01395256217757 20.588807902688547 49 18.28492385430307 26.87888429285535 34.61746688322252 20.21872496961906 50 16.865220649614226 29.703444713805794 33.600294430620785 19.831040205959198 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2101.0 1 3542.5 2 4984.0 3 16676.5 4 28369.0 5 21024.0 6 13679.0 7 14460.5 8 15242.0 9 16433.0 10 17624.0 11 17330.5 12 17037.0 13 15966.5 14 14896.0 15 13443.0 16 11990.0 17 10826.0 18 9662.0 19 9026.0 20 8390.0 21 7737.5 22 7085.0 23 8985.5 24 10886.0 25 11632.5 26 12379.0 27 13375.0 28 14371.0 29 21835.5 30 29300.0 31 34993.5 32 40687.0 33 52707.0 34 64727.0 35 64258.5 36 63790.0 37 62788.5 38 61787.0 39 67258.0 40 72729.0 41 81720.5 42 90712.0 43 93457.5 44 96203.0 45 91820.0 46 87437.0 47 82124.0 48 76811.0 49 71085.5 50 65360.0 51 55653.5 52 45947.0 53 37961.0 54 29975.0 55 26631.5 56 23288.0 57 21384.5 58 19481.0 59 18217.5 60 16954.0 61 15929.5 62 14905.0 63 12914.5 64 10924.0 65 9560.5 66 8197.0 67 7438.0 68 6679.0 69 5321.0 70 3963.0 71 3455.5 72 2948.0 73 2208.5 74 1469.0 75 1284.5 76 1100.0 77 737.0 78 374.0 79 312.5 80 251.0 81 181.0 82 111.0 83 78.0 84 45.0 85 26.0 86 7.0 87 8.0 88 9.0 89 9.0 90 9.0 91 7.0 92 5.0 93 3.5 94 2.0 95 1.5 96 1.0 97 0.5 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1124883.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 26.951681113218136 #Duplication Level Percentage of deduplicated Percentage of total 1 81.39436967280605 21.937150958328616 2 8.297958680391028 4.472878724891187 3 2.915674964529816 2.357470256214036 4 1.4321045909383927 1.5439050502298903 5 0.8111998609810279 1.0931599986123772 6 0.532615874698483 0.8612935926426755 7 0.3914050515861018 0.7384316895515916 8 0.29133967265292393 0.6281675162376771 9 0.23139820674316952 0.5612913610481184 >10 2.610283206182345 17.06462843082417 >50 0.6254107968225918 11.504534979129165 >100 0.39958641757471824 22.66471262088269 >500 0.059689257397053164 11.088321539206403 >1k 0.006632139710783684 2.048891093411679 >5k 0.0 0.0 >10k+ 3.316069855391842E-4 1.4351621887897381 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 16058 1.4275262405067906 No Hit TGATATTGTACCTTTTTCCCATACTTGATTTTTATAAAGAAACACACATC 1444 0.12836890592177141 No Hit GTTTTGGGCAAATTTAAGACTATGGGACAACCGTTTTTGTTTTAAATAAA 1389 0.12347950853555437 No Hit GGGCTAGGGCAATTTCTAATCATTTATATTGTAACCAGAAACCCAAAATT 1310 0.11645655592626078 No Hit TTGTAGGGGGGGAATTCAATACCTTTACAAATGCTTTAACAAGAGGAAAT 1280 0.1137896118974151 No Hit TGATTAGGGAGGATTGCTTTTTTAATAGTTTAGGTAAAAATTAGTGTATT 1226 0.10898911264549292 No Hit TTTTACGGGGTGTTTTTGCCAATTTAAGACCTAATTTAATAGTTAAACCA 1208 0.10738894622818551 No Hit TAACCAGGGGGGAATTCAATACCTTTACAAATGCTTTAACAAGAGGAAAT 1180 0.10489979846792954 No Hit TTATGTGGGGGGAATTCAATACCTTTACAAATGCTTTAACAAGAGGAAAT 1174 0.10436640966216043 No Hit ATGCAAGGGAACCAAACACAAATACGAAAAATTATAGCCTATTCATCAAT 1168 0.10383302085639129 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.10312183578203245 0.0 2 0.0 0.0 0.0 0.38270646813935316 0.0 3 0.0 0.0 0.0 0.5507239419566301 0.0 4 0.0 0.0 0.0 0.8624008007943937 0.0 5 0.0 0.0 0.0 1.4541067826609524 0.0 6 0.0 0.0 0.0 1.9703382485111784 0.0 7 0.0 0.0 0.0 2.2885046711524666 0.0 8 0.0 0.0 0.0 3.0425386462414314 0.0 9 0.0 0.0 0.0 3.3250569170304822 0.0 10 0.0 0.0 0.0 3.845911085864041 0.0 11 0.0 0.0 0.0 4.419570746468744 0.0 12 0.0 0.0 0.0 4.917666992922819 0.0 13 0.0 0.0 0.0 5.095374363378236 0.0 14 0.0 0.0 0.0 5.152624761864122 0.0 15 0.0 0.0 0.0 5.247123478619554 0.0 16 0.0 0.0 0.0 5.486970644947075 0.0 17 0.0 0.0 0.0 5.770555693347664 0.0 18 8.889813429485555E-5 0.0 0.0 6.2562062010004595 0.0 19 8.889813429485555E-5 0.0 0.0 6.455693614358116 0.0 20 8.889813429485555E-5 0.0 0.0 6.652514083686926 0.0 21 8.889813429485555E-5 0.0 0.0 6.970680506328214 0.0 22 8.889813429485555E-5 0.0 0.0 7.2530209808486745 0.0 23 8.889813429485555E-5 0.0 0.0 7.601590565418803 0.0 24 8.889813429485555E-5 0.0 0.0 7.872463180615228 0.0 25 8.889813429485555E-5 0.0 0.0 8.086618786131535 0.0 26 8.889813429485555E-5 0.0 0.0 8.320420879327006 0.0 27 8.889813429485555E-5 0.0 0.0 8.51821922813306 0.0 28 8.889813429485555E-5 0.0 0.0 8.731930342977892 0.0 29 8.889813429485555E-5 0.0 0.0 8.962887695875926 0.0 30 8.889813429485555E-5 0.0 0.0 9.34230493304637 0.0 31 8.889813429485555E-5 0.0 0.0 9.697808572091498 0.0 32 8.889813429485555E-5 0.0 0.0 9.954190791397862 0.0 33 8.889813429485555E-5 0.0 0.0 10.217773759582107 0.0 34 8.889813429485555E-5 0.0 0.0 10.468555396427895 0.0 35 8.889813429485555E-5 0.0 0.0 10.875975545901218 0.0 36 8.889813429485555E-5 0.0 0.0 11.146314772291873 0.0 37 8.889813429485555E-5 0.0 0.0 11.405897324432852 0.0 38 8.889813429485555E-5 0.0 0.0 11.66894690381133 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTAGATT 20 7.856409E-4 44.000004 37 AACGTAG 20 7.856409E-4 44.000004 1 AGCCGTC 20 7.856409E-4 44.000004 24 TAATACG 20 7.856409E-4 44.000004 1 ACACGAT 20 7.856409E-4 44.000004 31 CTATAAG 20 7.856409E-4 44.000004 38 CCAATAC 20 7.856409E-4 44.000004 34 TACGGGT 20 7.856409E-4 44.000004 4 CCGTCCA 20 7.856409E-4 44.000004 19 ATATCCG 20 7.856409E-4 44.000004 1 TCGGACG 20 7.856409E-4 44.000004 1 TACGCCC 20 7.856409E-4 44.000004 20 GTATGCG 20 7.856409E-4 44.000004 1 CTACGAT 20 7.856409E-4 44.000004 11 GTCAAGC 40 8.312782E-9 44.000004 16 TATAGCG 20 7.856409E-4 44.000004 1 CGTCCAA 20 7.856409E-4 44.000004 20 CCGTTGA 20 7.856409E-4 44.000004 20 CCGTTAT 20 7.856409E-4 44.000004 20 TGCGTTA 20 7.856409E-4 44.000004 12 >>END_MODULE