##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546264_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1149276 Sequences flagged as poor quality 0 Sequence length 50 %GC 39 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.85267942600385 31.0 31.0 34.0 30.0 34.0 2 32.241776561939865 33.0 31.0 34.0 30.0 34.0 3 32.274645080903106 34.0 31.0 34.0 30.0 34.0 4 35.96296625005656 37.0 35.0 37.0 35.0 37.0 5 35.885279950159926 37.0 35.0 37.0 35.0 37.0 6 35.97164562733408 37.0 35.0 37.0 35.0 37.0 7 36.18348595115533 37.0 35.0 37.0 35.0 37.0 8 36.090912017652855 37.0 35.0 37.0 35.0 37.0 9 37.88552880248086 39.0 38.0 39.0 35.0 39.0 10 37.5244754088661 39.0 37.0 39.0 35.0 39.0 11 37.30364768776169 39.0 37.0 39.0 34.0 39.0 12 36.59572374259969 39.0 35.0 39.0 33.0 39.0 13 36.29545470365691 39.0 35.0 39.0 33.0 39.0 14 37.40995548501839 40.0 35.0 41.0 33.0 41.0 15 37.65953609054744 40.0 35.0 41.0 33.0 41.0 16 37.791267719851454 40.0 35.0 41.0 33.0 41.0 17 37.72017513634671 40.0 35.0 41.0 34.0 41.0 18 37.55948614606065 39.0 36.0 41.0 34.0 41.0 19 37.30065449900633 38.0 35.0 41.0 34.0 41.0 20 37.01594221057431 38.0 35.0 41.0 33.0 41.0 21 36.898183726102346 38.0 35.0 41.0 33.0 41.0 22 36.8175921188644 38.0 35.0 41.0 33.0 41.0 23 36.750635182497504 37.0 35.0 41.0 33.0 41.0 24 36.68519050254247 37.0 35.0 41.0 33.0 41.0 25 36.65608609246169 37.0 35.0 41.0 33.0 41.0 26 36.62036969361581 37.0 35.0 41.0 33.0 41.0 27 36.52613906494175 37.0 35.0 41.0 33.0 41.0 28 36.45041225954427 37.0 35.0 41.0 32.0 41.0 29 36.37322627462855 37.0 35.0 41.0 32.0 41.0 30 36.1429473860065 37.0 35.0 41.0 31.0 41.0 31 35.79831389500868 37.0 35.0 41.0 30.0 41.0 32 35.41279379365792 37.0 35.0 41.0 29.0 41.0 33 34.955038650419915 37.0 35.0 41.0 24.0 41.0 34 34.55175171151229 37.0 34.0 41.0 22.0 41.0 35 34.293373393336324 37.0 34.0 40.0 20.0 41.0 36 34.06319543782347 36.0 34.0 40.0 18.0 41.0 37 33.974799786996336 36.0 34.0 40.0 18.0 41.0 38 33.96304978090554 36.0 34.0 40.0 18.0 41.0 39 33.90045298083315 36.0 34.0 40.0 18.0 41.0 40 33.775763176121316 36.0 34.0 40.0 18.0 41.0 41 33.70599055405316 36.0 34.0 40.0 16.0 41.0 42 33.598629920054016 36.0 34.0 40.0 15.0 41.0 43 33.49239260195114 36.0 33.0 40.0 15.0 41.0 44 33.34608744983799 35.0 33.0 40.0 15.0 41.0 45 33.324120576780516 35.0 33.0 40.0 15.0 41.0 46 33.2393158823468 35.0 33.0 40.0 15.0 41.0 47 33.21889868056063 35.0 33.0 40.0 15.0 41.0 48 33.18332759058747 35.0 33.0 40.0 15.0 41.0 49 33.096715671431404 36.0 33.0 40.0 13.0 41.0 50 32.88695317747869 35.0 33.0 40.0 12.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 2.0 11 3.0 12 5.0 13 1.0 14 10.0 15 22.0 16 70.0 17 161.0 18 449.0 19 944.0 20 1597.0 21 2744.0 22 4352.0 23 6877.0 24 11177.0 25 18285.0 26 28707.0 27 34495.0 28 32719.0 29 28551.0 30 27143.0 31 28881.0 32 33937.0 33 44591.0 34 87021.0 35 180469.0 36 59032.0 37 73893.0 38 125870.0 39 317268.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.247696810861793 22.725959647639034 28.045221513370155 20.98112202812901 2 35.67898398644016 22.87570609670784 30.00793543065373 11.437374486198268 3 25.82173472690633 23.11211580160031 39.68167785631998 11.384471615173378 4 22.373302844573452 25.463422189273942 40.080537660231315 12.082737305921293 5 20.324621761874432 29.443406109585514 38.72672882754012 11.505243300999934 6 17.226149332275277 40.074098823955254 34.50085097052405 8.198900873245417 7 79.30035953069586 3.374820321663378 15.979625433751336 1.34519471388944 8 79.96155840720593 2.600071697312047 15.487315492536172 1.9510544029458545 9 76.95914645394144 3.709726819319293 16.968160824727914 2.362965902011353 10 43.67845495772991 25.309847242959915 22.668445177659674 8.3432526216505 11 36.890442330649904 18.90398824999391 31.055551495028173 13.150017924328012 12 36.298243415854856 19.035723359749966 33.07325655456131 11.592776669833878 13 17.74282243777822 37.42077621041421 31.05502942722201 13.781371924585564 14 11.04303926994038 38.447857607746094 33.901604140345746 16.607498981967776 15 9.87830599438255 24.336973886168337 53.22394272568122 12.560777393767902 16 11.352103411191045 19.89983259025682 49.60514271593595 19.142921282616186 17 11.532303815619573 22.39810106536637 33.823293969420746 32.24630114959331 18 14.146036287192981 25.5037084216498 43.52340081929841 16.826854471858805 19 17.871338129396246 26.197797569948385 34.87717484746919 21.05368945318618 20 21.804683992356928 21.031588582725124 39.27942461166856 17.884302813249384 21 15.822744057998253 28.9591012080649 37.44766270243179 17.770492031505054 22 20.343590225498488 22.880230684361287 31.923054166275115 24.85312492386511 23 13.999422244961176 27.37332024683366 32.389434739784 26.237822768421164 24 12.940494711453123 22.745972246875425 49.96980707854336 14.34372596312809 25 12.090655334314821 28.41188713590121 42.95069243593358 16.54676509385039 26 14.28934389998573 28.8124871658331 36.18817412005471 20.70999481412646 27 12.48333733585318 36.18269240808996 32.81596413742217 18.518006118634688 28 10.846828786122742 29.785186500022625 41.434259481621474 17.933725232233165 29 11.25369362972863 23.03424068718045 39.777651321353616 25.9344143617373 30 13.248688739693511 32.20801617714108 36.978932823795155 17.56436225937025 31 19.20426424984077 33.6433545988953 30.51512430434465 16.637256846919275 32 20.066633254327073 24.869657071060388 35.0325770311048 20.03113264350774 33 20.79996449938918 30.783902213219456 30.17334391390754 18.242789373483827 34 15.441373525593505 27.908265725552432 32.356370445393445 24.293990303460614 35 17.129218742930334 26.48023625308455 34.27505664435697 22.11548835962815 36 24.64020827025014 28.751927300317764 30.54235884156634 16.065505587865754 37 15.672997608929448 31.624953448953953 36.70441216905252 15.997636773064086 38 15.071575496225451 29.78596960173187 35.32423891214991 19.818215989892767 39 16.364824463401305 30.71290099158079 34.73273608776308 18.189538457254827 40 18.040836143798355 26.898325554523023 33.34246951994125 21.71836878173737 41 13.697231996491704 28.10699953709988 34.20292427580494 23.992844190603478 42 16.544937856528804 26.973851363815132 31.19276831674898 25.288442462907085 43 17.28227162143819 26.76554630915463 32.76802091055586 23.18416115885131 44 14.52618866138334 28.20819368019518 32.31095054625695 24.95466711216453 45 14.497387920743146 37.527713099377344 27.715970750281045 20.25892822959846 46 19.600687737323323 31.996578715643587 31.81481210779656 16.587921439236528 47 15.821699922385921 30.029079176803485 33.2586776370515 20.8905432637591 48 15.975709925205086 28.418587006080347 34.97967416007991 20.62602890863465 49 18.356861189131244 26.79225877857016 34.4834487103185 20.3674313219801 50 16.833641353338972 29.652494265955266 33.62638739519489 19.887476985510876 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2232.0 1 3658.5 2 5085.0 3 17005.0 4 28925.0 5 21215.5 6 13506.0 7 14435.0 8 15364.0 9 16577.5 10 17791.0 11 17730.5 12 17670.0 13 16290.5 14 14911.0 15 13485.5 16 12060.0 17 10965.0 18 9870.0 19 9174.5 20 8479.0 21 7845.5 22 7212.0 23 9092.5 24 10973.0 25 11903.5 26 12834.0 27 13580.0 28 14326.0 29 22124.5 30 29923.0 31 35354.5 32 40786.0 33 53656.5 34 66527.0 35 65672.5 36 64818.0 37 63976.0 38 63134.0 39 68643.5 40 74153.0 41 83391.5 42 92630.0 43 95658.0 44 98686.0 45 93954.5 46 89223.0 47 84262.0 48 79301.0 49 73528.0 50 67755.0 51 57435.5 52 47116.0 53 39258.0 54 31400.0 55 27581.0 56 23762.0 57 21679.5 58 19597.0 59 18502.5 60 17408.0 61 16335.5 62 15263.0 63 13221.0 64 11179.0 65 9664.0 66 8149.0 67 7395.0 68 6641.0 69 5396.5 70 4152.0 71 3573.5 72 2995.0 73 2243.5 74 1492.0 75 1288.5 76 1085.0 77 727.0 78 369.0 79 325.5 80 282.0 81 201.5 82 121.0 83 93.5 84 66.0 85 38.5 86 11.0 87 9.0 88 7.0 89 6.0 90 5.0 91 3.0 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1149276.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 26.84225394916739 #Duplication Level Percentage of deduplicated Percentage of total 1 81.0305877549229 21.75043614167934 2 8.471426008230951 4.5478433644903316 3 2.9695807581019507 2.3913072249460066 4 1.470290278635688 1.5786362015252484 5 0.8581108474703041 1.1516814642166573 6 0.5490159243705862 0.8842094918455291 7 0.41105461389315506 0.7723542633167912 8 0.2884241799842761 0.6193564067374641 9 0.24315857335606852 0.5874231758346754 >10 2.616266138424362 16.887744744902225 >50 0.6229291730728386 11.337997369323508 >100 0.40124733206741314 22.607901052978416 >500 0.059419865285816637 10.88781413390352 >1k 0.008162069407392395 2.559214714684357 >5k 0.0 0.0 >10k+ 3.264827762956958E-4 1.4360802496158804 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 16387 1.4258541899421897 No Hit TGATATTGTACCTTTTTCCCATACTTGATTTTTATAAAGAAACACACATC 1473 0.12816764641391626 No Hit GTTTTGGGCAAATTTAAGACTATGGGACAACCGTTTTTGTTTTAAATAAA 1432 0.12460018307177737 No Hit GGGCTAGGGCAATTTCTAATCATTTATATTGTAACCAGAAACCCAAAATT 1381 0.12016260671936072 No Hit TTATGTGGGGGGAATTCAATACCTTTACAAATGCTTTAACAAGAGGAAAT 1339 0.11650813207619405 No Hit TTGTAGGGGGGGAATTCAATACCTTTACAAATGCTTTAACAAGAGGAAAT 1286 0.11189653312172186 No Hit TGATTAGGGAGGATTGCTTTTTTAATAGTTTAGGTAAAAATTAGTGTATT 1281 0.11146147661658297 No Hit TAACCAGGGGGGAATTCAATACCTTTACAAATGCTTTAACAAGAGGAAAT 1251 0.10885113758574963 No Hit TTTTACGGGGTGTTTTTGCCAATTTAAGACCTAATTTAATAGTTAAACCA 1248 0.1085901036826663 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1238 0.10771999067238852 No Hit ATGCAAGGGAACCAAACACAAATACGAAAAATTATAGCCTATTCATCAAT 1222 0.10632780985594409 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.10276034651380521 0.0 2 0.0 0.0 0.0 0.3856340861551098 0.0 3 0.0 0.0 0.0 0.5618319707363593 0.0 4 0.0 0.0 0.0 0.8708091006859972 0.0 5 0.0 0.0 0.0 1.4473459812960507 0.0 6 0.0 0.0 0.0 1.9816823809076323 0.0 7 0.0 0.0 0.0 2.324419895656048 0.0 8 0.0 0.0 0.0 3.0944699097518784 0.0 9 0.0 0.0 0.0 3.3807370901332665 0.0 10 0.0 0.0 0.0 3.917770840076709 0.0 11 0.0 0.0 0.0 4.52102019010229 0.0 12 0.0 0.0 0.0 5.031428481931234 0.0 13 0.0 0.0 0.0 5.217110598324511 0.0 14 0.0 0.0 0.0 5.277583452538816 0.0 15 0.0 0.0 0.0 5.374775075786843 0.0 16 0.0 0.0 0.0 5.6224092385118976 0.0 17 0.0 0.0 0.0 5.915898356878591 0.0 18 0.0 0.0 0.0 6.414299089165701 0.0 19 0.0 0.0 0.0 6.623909313341617 0.0 20 0.0 0.0 0.0 6.833345514915477 0.0 21 0.0 0.0 0.0 7.161900187596365 0.0 22 0.0 0.0 0.0 7.453475057340447 0.0 23 0.0 0.0 0.0 7.814832990508807 0.0 24 0.0 0.0 0.0 8.105798781145696 0.0 25 0.0 0.0 0.0 8.323849101521306 0.0 26 0.0 0.0 0.0 8.561825009832278 0.0 27 0.0 0.0 0.0 8.763691228216722 0.0 28 0.0 0.0 0.0 8.978000062648137 0.0 29 0.0 0.0 0.0 9.230854903434858 0.0 30 0.0 0.0 0.0 9.618577260814634 0.0 31 0.0 0.0 0.0 9.983328634723078 0.0 32 0.0 0.0 0.0 10.246189775127993 0.0 33 0.0 0.0 0.0 10.506614599104132 0.0 34 0.0 0.0 0.0 10.758599326880574 0.0 35 0.0 0.0 0.0 11.179560001252963 0.0 36 0.0 0.0 0.0 11.457561108036712 0.0 37 0.0 0.0 0.0 11.735040147014294 0.0 38 0.0 0.0 0.0 11.993289688464738 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTTGCGA 95 0.0 44.000004 1 TCACGAC 85 0.0 44.0 25 GTTTGCG 50 2.7284841E-11 44.0 1 AACCGCT 20 7.8564824E-4 44.0 35 AAATCGT 55 1.8189894E-12 44.0 12 CGACGTC 35 1.4460784E-7 44.0 18 CTATCGA 20 7.8564824E-4 44.0 30 GCGAAGA 30 2.5277168E-6 44.0 9 TAGACCG 20 7.8564824E-4 44.0 13 GCTATGT 20 7.8564824E-4 44.0 32 ATTAACG 30 2.5277168E-6 44.0 1 TTCCGTA 20 7.8564824E-4 44.0 40 ATTCGCA 20 7.8564824E-4 44.0 44 TCTAGCG 20 7.8564824E-4 44.0 1 CGTTCAA 25 4.4428405E-5 44.0 9 ATCGTTA 20 7.8564824E-4 44.0 15 TCGGCAC 20 7.8564824E-4 44.0 42 ATCCGTT 20 7.8564824E-4 44.0 34 ATACTAC 25 4.4428405E-5 44.0 44 TACGCAT 45 4.802132E-10 44.0 11 >>END_MODULE