##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546262_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1585104 Sequences flagged as poor quality 0 Sequence length 50 %GC 39 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.747465781425067 31.0 31.0 34.0 30.0 34.0 2 32.1495523322129 33.0 31.0 34.0 30.0 34.0 3 32.22751440914918 33.0 31.0 34.0 30.0 34.0 4 35.911634820175834 37.0 35.0 37.0 35.0 37.0 5 35.81181739494696 37.0 35.0 37.0 35.0 37.0 6 35.908824909911274 37.0 35.0 37.0 35.0 37.0 7 36.129014878519015 37.0 35.0 37.0 35.0 37.0 8 36.0286605799998 37.0 35.0 37.0 35.0 37.0 9 37.79613198881587 39.0 38.0 39.0 35.0 39.0 10 37.44620983859734 39.0 37.0 39.0 35.0 39.0 11 37.26169134643531 39.0 37.0 39.0 34.0 39.0 12 36.67994402890914 39.0 35.0 39.0 33.0 39.0 13 36.400623555299845 39.0 35.0 39.0 33.0 39.0 14 37.52224964418738 40.0 35.0 41.0 33.0 41.0 15 37.77529550111539 40.0 35.0 41.0 33.0 41.0 16 37.91638088100213 40.0 35.0 41.0 34.0 41.0 17 37.86823135895184 40.0 35.0 41.0 34.0 41.0 18 37.755855136319134 39.0 36.0 41.0 34.0 41.0 19 37.57060167660923 39.0 36.0 41.0 34.0 41.0 20 37.35882061997194 39.0 35.0 41.0 33.0 41.0 21 37.252085667565034 39.0 35.0 41.0 33.0 41.0 22 37.19147134825223 39.0 35.0 41.0 33.0 41.0 23 37.13608255357377 38.0 35.0 41.0 33.0 41.0 24 37.05145908407272 38.0 35.0 41.0 33.0 41.0 25 37.05525000252349 38.0 35.0 41.0 33.0 41.0 26 37.01145098365785 38.0 35.0 41.0 33.0 41.0 27 36.951280168367504 38.0 35.0 41.0 33.0 41.0 28 36.91069292614239 38.0 35.0 41.0 33.0 41.0 29 36.80906426329124 38.0 35.0 41.0 32.0 41.0 30 36.62613178693638 38.0 35.0 41.0 32.0 41.0 31 36.38645035278442 38.0 35.0 41.0 31.0 41.0 32 36.09296929412834 38.0 35.0 41.0 30.0 41.0 33 35.79462609393453 38.0 35.0 41.0 30.0 41.0 34 35.55191772905753 38.0 35.0 41.0 27.0 41.0 35 35.338189166136736 38.0 35.0 41.0 25.0 41.0 36 35.13493373305474 38.0 35.0 41.0 24.0 41.0 37 35.071950484006095 38.0 35.0 40.0 24.0 41.0 38 35.067319873017794 38.0 35.0 41.0 24.0 41.0 39 35.018512349978295 38.0 35.0 41.0 24.0 41.0 40 34.92438603397632 38.0 35.0 41.0 23.0 41.0 41 34.89050497632963 38.0 34.0 41.0 23.0 41.0 42 34.800164531790976 38.0 34.0 41.0 23.0 41.0 43 34.6858773935338 38.0 34.0 40.0 23.0 41.0 44 34.53391133957141 38.0 34.0 40.0 22.0 41.0 45 34.44151172415185 38.0 34.0 40.0 22.0 41.0 46 34.32493009922377 37.0 34.0 40.0 21.0 41.0 47 34.314800795405226 37.0 34.0 40.0 21.0 41.0 48 34.29117584713684 37.0 34.0 40.0 21.0 41.0 49 34.21497138358114 37.0 34.0 40.0 20.0 41.0 50 34.01062643208269 37.0 34.0 40.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 1.0 11 5.0 12 3.0 13 3.0 14 13.0 15 21.0 16 48.0 17 141.0 18 399.0 19 833.0 20 1639.0 21 2718.0 22 4626.0 23 7184.0 24 11725.0 25 19802.0 26 30214.0 27 36443.0 28 36007.0 29 32841.0 30 33477.0 31 37826.0 32 46755.0 33 61207.0 34 110848.0 35 222724.0 36 86812.0 37 111508.0 38 192267.0 39 497012.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.275557944462946 24.784682897778314 29.30299841524594 17.636760742512795 2 32.007742078753196 24.711880103766063 31.577423311025647 11.702954506455097 3 25.173553281046544 25.01463626361425 38.71777498511138 11.094035470227821 4 22.779704044655745 27.566771644005694 37.794933329295745 11.858590982042818 5 19.35431366017624 31.071210469470774 36.8254070395381 12.749068830814887 6 16.241710323108137 41.45898313296793 32.68126255438129 9.618043989542642 7 82.15214900725756 3.0225776983718418 12.958077198720083 1.867196095650506 8 82.10723081892418 2.2460986786986847 12.226074755978157 3.4205957463989742 9 78.09310934803017 3.8880729592506236 14.562451422745761 3.456366269973453 10 39.21345224035773 30.55219089725343 20.295702994882355 9.938653867506485 11 31.508658106975947 18.742429518820217 32.700819630762396 17.04809274344144 12 33.26564061411743 18.56572187061543 34.363234210499755 13.805403304767383 13 16.332682271951874 39.01119421817118 29.85141668937811 14.804706820498845 14 9.630724545518781 39.722377837668695 31.595529378513966 19.05136823829856 15 7.890775621031806 26.78669664577214 50.712950065106135 14.609577668089917 16 9.040984061613623 21.151735154286406 45.55051277392524 24.256768010174724 17 9.32468784382602 23.72021015655755 32.59748256265835 34.35761943695808 18 12.366885705922135 26.58418627421292 42.59159020480675 18.457337815058192 19 15.869368823749106 30.720507928817288 32.152085919914406 21.2580373275192 20 21.752957534647567 22.36648194692588 37.65847540603014 18.22208511239641 21 14.152320604830976 29.955889329659126 35.75298529307856 20.138804772431335 22 17.841289909053287 22.792889299377205 29.250825182448597 30.114995609120914 23 12.685413701561538 27.346344466987656 30.95809486317617 29.010146968274636 24 10.714565101091159 23.354114304171837 50.35076562799665 15.580554966740353 25 12.009243557520517 31.85078076895901 38.58819358225076 17.55178209126972 26 15.044501811868496 28.894129344194454 34.340901291019385 21.720467552917665 27 12.03561406696343 35.34613501700834 29.68234260969627 22.93590830633195 28 10.428842523897487 28.13910002119735 39.229097901462616 22.20295955344255 29 10.555017210227216 21.606657985848248 38.531793497461365 29.306531306463175 30 12.886725413600622 32.1639463404294 35.59249109206715 19.356837153902838 31 18.351414165884382 35.072209772986504 28.619636314084122 17.95673974704499 32 17.920401437382026 25.26585006409674 32.909827998667595 23.903920499853637 33 17.5094504840061 31.68063420444337 30.277130081054622 20.532785230495918 34 14.7128516488508 22.715228779941256 34.205074241185436 28.36684533002251 35 15.582195237662638 25.49353228557874 35.314969869484905 23.60930260727372 36 21.429887250300293 29.63691972261757 30.789651656925983 18.143541370156154 37 13.862245000958929 31.6457469036732 36.236486691094086 18.25552140427379 38 13.155098971423957 26.453847823234312 41.04664425804238 19.344408947299357 39 13.470535687248281 31.455790913403792 34.49634850457762 20.57732489477031 40 17.32403678244456 25.026370509442913 36.640687298751374 21.00890540936115 41 11.78130898666586 27.051158788319253 35.78143768484592 25.386094540168973 42 15.137240206320849 26.45618205493141 32.1673530569603 26.239224681787444 43 16.13736385751345 24.21923104099163 34.96723243396017 24.67617266753475 44 14.78533900614723 26.60815946461557 33.981051085607 24.625450443630196 45 13.844580544872764 35.727876530498946 28.73533850144849 21.692204423179803 46 18.23792003553079 31.393965317102225 33.24652514913848 17.121589498228506 47 14.606044776872684 28.048001897667284 34.85165642128214 22.494296904177897 48 14.32057454905167 23.7361081670351 38.09264250169074 23.85067478222249 49 16.502639574438017 24.32149562426188 37.26840636324178 21.90745843805832 50 15.379874128132917 27.79167802238844 35.331246404021435 21.497201445457208 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1938.0 1 3185.0 2 4432.0 3 14740.5 4 25049.0 5 18680.0 6 12311.0 7 13396.0 8 14481.0 9 15638.5 10 16796.0 11 16486.5 12 16177.0 13 15118.5 14 14060.0 15 12854.0 16 11648.0 17 10994.5 18 10341.0 19 10358.0 20 10375.0 21 9492.5 22 8610.0 23 10906.5 24 13203.0 25 14215.0 26 15227.0 27 22708.0 28 30189.0 29 36835.5 30 43482.0 31 55827.5 32 68173.0 33 83007.0 34 97841.0 35 98932.5 36 100024.0 37 107375.5 38 114727.0 39 113618.5 40 112510.0 41 120427.0 42 128344.0 43 131849.5 44 135355.0 45 135342.5 46 135330.0 47 138362.5 48 141395.0 49 128006.5 50 114618.0 51 90600.0 52 66582.0 53 52053.5 54 37525.0 55 29581.0 56 21637.0 57 18576.5 58 15516.0 59 13698.5 60 11881.0 61 11542.5 62 11204.0 63 9392.0 64 7580.0 65 6356.0 66 5132.0 67 4811.0 68 4490.0 69 3638.0 70 2786.0 71 2475.5 72 2165.0 73 1471.0 74 777.0 75 705.0 76 633.0 77 490.5 78 348.0 79 216.5 80 85.0 81 86.0 82 87.0 83 54.0 84 21.0 85 14.0 86 7.0 87 7.0 88 7.0 89 5.0 90 3.0 91 1.5 92 0.0 93 0.0 94 0.0 95 1.0 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1585104.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 20.875292587821985 #Duplication Level Percentage of deduplicated Percentage of total 1 74.06365873860967 15.461005462930752 2 10.264867442043734 4.285642224557415 3 4.343557422911842 2.7201909622587217 4 2.4823067835828954 2.0727552160011298 5 1.5539147284686043 1.6219212306654032 6 1.0396515627728924 1.30218183373623 7 0.7307741809027681 1.0678587389379866 8 0.5810559177279848 0.9703769833965681 9 0.43490589730237567 0.8170909068920716 >10 3.172443343151837 14.271425164354252 >50 0.6650627451023484 9.637159270404956 >100 0.5445289032591765 24.21429671911368 >500 0.10531414227332937 15.299590629766085 >1k 0.01765381575680088 5.353449322520181 >5k 0.0 0.0 >10k+ 3.043761337379462E-4 0.9050553344645649 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 14244 0.8986161160403355 No Hit AGTGTTGGGTTAACAGAGAAGTTATAGGTGGATTATTTATAGTGTGATTA 3941 0.24862721941273253 No Hit CCTGTCTCTTATACACATCTGACGCTCGTTCTCTCGTATGCCGTCTTCTG 3475 0.2192285174979055 Illumina PCR Primer Index 10 (95% over 22bp) CTGTCTCTTATACACATCTGACGCTCGTTCTCTCGTATGCCGTCTTCTGC 3438 0.2168942858008055 Illumina PCR Primer Index 10 (95% over 23bp) GCTGTCTCTTATACACATCTGACGCTCGTTCTCTCGTATGCCGTCTTCTG 2360 0.14888612986908115 Illumina PCR Primer Index 10 (95% over 22bp) GGTGTTGGGTTAACAGAGAAGTTATAGGTGGATTATTTATAGTGTGATTA 2225 0.1403693385418244 No Hit TCTGTCTCTTATACACATCTGACGCTCGTTCTCTCGTATGCCGTCTTCTG 2160 0.13626866123610817 Illumina PCR Primer Index 10 (95% over 22bp) GGTTAGGGGGGGAATTCATCGACAATAAACAAAGAAATAGAACTTTTAAC 1889 0.11917199123842978 No Hit AGTTTTGGGACTAATCCTAGCCCTAGCCCTACACAAATATAATTATACTA 1800 0.11355721769675681 No Hit GAGCTGTCTCTTATACACATCTGACGCTCGTTCTCTCGTATGCCGTCTTC 1792 0.11305251895143789 No Hit GAAGGGGGGACATAAGTAATTTAAATTAGGGTTGGTATTTATTTCACTGT 1737 0.10958271507737032 No Hit TCTGTAGGGATGCCACAACTAGATACATCAACATGATTTATCACAATTAT 1663 0.10491425168317031 No Hit GATGCAGGGCCAGCAATACTAACTATAATCTCACTGATATTACTATCCCT 1656 0.10447264028101626 No Hit ATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATCCC 1630 0.10283236935872976 No Hit TATGTAGGGACTAATCCTAGCCCTAGCCCTACACAAATATAATTATACTA 1609 0.1015075351522676 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.24029969011497038 0.0 2 0.0 0.0 0.0 0.9141986898020572 0.0 3 0.0 0.0 0.0 1.2650274051418708 0.0 4 0.0 0.0 0.0 1.9188646297025305 0.0 5 0.0 0.0 0.0 3.2248988079015635 0.0 6 0.0 0.0 0.0 4.372962278815775 0.0 7 0.0 0.0 0.0 5.033549849095075 0.0 8 0.0 0.0 0.0 6.4791332303747895 0.0 9 0.0 0.0 0.0 7.009571611704973 0.0 10 0.0 0.0 0.0 8.107606819489448 0.0 11 0.0 0.0 0.0 9.313458296742674 0.0 12 0.0 0.0 0.0 10.306389990814482 0.0 13 0.0 0.0 0.0 10.661382470803177 0.0 14 0.0 0.0 0.0 10.766738333888503 0.0 15 0.0 0.0 0.0 10.959785603972989 0.0 16 0.0 0.0 0.0 11.467954153165975 0.0 17 0.0 0.0 0.0 12.09188797706649 0.0 18 0.0 0.0 0.0 13.063874673207563 0.0 19 0.0 0.0 0.0 13.430159787622769 0.0 20 0.0 0.0 0.0 13.783575084032341 0.0 21 0.0 0.0 0.0 14.37930886553816 0.0 22 0.0 0.0 0.0 14.927033178895517 0.0 23 0.0 0.0 0.0 15.657332263371993 0.0 24 0.0 0.0 0.0 16.161652484631922 0.0 25 0.0 0.0 0.0 16.54818863620305 0.0 26 0.0 0.0 0.0 16.937563718216598 0.0 27 0.0 0.0 0.0 17.27451321806014 0.0 28 0.0 0.0 0.0 17.62805468915604 0.0 29 0.0 0.0 0.0 18.031624423381682 0.0 30 0.0 0.0 0.0 18.628935388466623 0.0 31 0.0 0.0 0.0 19.094709243052822 0.0 32 0.0 0.0 0.0 19.45689368016231 0.0 33 0.0 0.0 0.0 19.82557611361778 0.0 34 0.0 0.0 0.0 20.182208864528764 0.0 35 0.0 0.0 0.0 20.864498480856778 0.0 36 0.0 0.0 0.0 21.221509755826748 0.0 37 0.0 0.0 0.0 21.563695505152975 0.0 38 0.0 0.0 0.0 21.91092824193239 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AGCTTAG 145 0.0 44.000004 1 TCGTCAG 55 1.8189894E-12 44.000004 1 TCGACTG 110 0.0 44.000004 1 ACGCGAG 30 2.5283261E-6 44.0 1 TCGCCAG 35 1.4465513E-7 44.0 25 CGGAATA 25 4.4436063E-5 44.0 6 CGGCGTA 80 0.0 44.0 21 CGGGTAC 70 0.0 44.0 6 GTACCTC 20 7.8573875E-4 44.0 9 ATCTCGA 35 1.4465513E-7 44.0 17 CTCACGA 90 0.0 44.0 24 GTACCCG 20 7.8573875E-4 44.0 28 TCCGCAC 20 7.8573875E-4 44.0 27 CGTGCAT 20 7.8573875E-4 44.0 35 CGTGATA 20 7.8573875E-4 44.0 39 CGCATTA 25 4.4436063E-5 44.0 26 CGTTGTA 25 4.4436063E-5 44.0 14 GACGTAC 20 7.8573875E-4 44.0 28 TAGCGGA 125 0.0 44.0 3 ATTCGTC 20 7.8573875E-4 44.0 14 >>END_MODULE